Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0612

Experiment: KB with Escin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0610 and Psyr_0611 overlap by 4 nucleotidesPsyr_0611 and Psyr_0612 are separated by 66 nucleotidesPsyr_0612 and Psyr_0613 are separated by 1 nucleotidesPsyr_0613 and Psyr_0614 are separated by 7 nucleotides Psyr_0610: Psyr_0610 - ABC-2, at 700,534 to 701,310 _0610 Psyr_0611: Psyr_0611 - ABC transporter, at 701,307 to 702,011 _0611 Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839 _0612 Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Psyr_0614: Psyr_0614 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 703,463 to 704,101 _0614 Position (kb) 702 703Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.099 kb on + strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.100 kb on - strand, within Psyr_0610at 701.146 kb on + strand, within Psyr_0610at 701.147 kb on - strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.164 kb on + strand, within Psyr_0610at 701.165 kb on - strand, within Psyr_0610at 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.302 kb on + strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.303 kb on - strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.306 kb on + strandat 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.452 kb on + strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.453 kb on - strand, within Psyr_0611at 701.511 kb on - strand, within Psyr_0611at 701.511 kb on - strand, within Psyr_0611at 701.516 kb on + strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.517 kb on - strand, within Psyr_0611at 701.642 kb on + strand, within Psyr_0611at 701.643 kb on - strand, within Psyr_0611at 701.647 kb on - strand, within Psyr_0611at 701.647 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.773 kb on - strand, within Psyr_0611at 701.837 kb on - strand, within Psyr_0611at 701.936 kb on - strand, within Psyr_0611at 701.936 kb on - strand, within Psyr_0611at 701.946 kb on - strandat 702.007 kb on - strandat 702.163 kb on + strand, within Psyr_0612at 702.163 kb on + strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.164 kb on - strand, within Psyr_0612at 702.173 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.234 kb on - strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.351 kb on + strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.352 kb on - strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.411 kb on + strand, within Psyr_0612at 702.425 kb on + strand, within Psyr_0612at 702.426 kb on - strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.427 kb on + strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.428 kb on - strand, within Psyr_0612at 702.436 kb on - strand, within Psyr_0612at 702.563 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.888 kb on + strandat 703.119 kb on + strand, within Psyr_0613at 703.120 kb on - strand, within Psyr_0613at 703.165 kb on + strand, within Psyr_0613at 703.166 kb on - strand, within Psyr_0613at 703.166 kb on - strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.416 kb on + strandat 703.523 kb on + strandat 703.524 kb on - strandat 703.524 kb on - strandat 703.524 kb on - strandat 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.709 kb on + strand, within Psyr_0614at 703.709 kb on + strand, within Psyr_0614at 703.772 kb on + strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Escin 10 mM
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701,099 + Psyr_0610 0.73 -1.2
701,099 + Psyr_0610 0.73 +0.0
701,099 + Psyr_0610 0.73 -2.3
701,099 + Psyr_0610 0.73 -0.5
701,100 - Psyr_0610 0.73 -0.4
701,100 - Psyr_0610 0.73 -0.2
701,146 + Psyr_0610 0.79 -0.1
701,147 - Psyr_0610 0.79 -0.1
701,164 + Psyr_0610 0.81 -0.7
701,164 + Psyr_0610 0.81 +0.0
701,164 + Psyr_0610 0.81 +0.3
701,165 - Psyr_0610 0.81 +0.3
701,302 + +1.2
701,302 + -0.5
701,302 + -0.8
701,302 + -0.0
701,302 + +0.5
701,303 - -1.2
701,303 - -1.5
701,303 - -1.2
701,303 - +0.4
701,303 - +0.8
701,303 - -0.6
701,306 + +0.9
701,306 + -1.3
701,306 + +1.3
701,306 + -0.5
701,306 + -0.5
701,452 + Psyr_0611 0.21 +0.2
701,452 + Psyr_0611 0.21 +1.8
701,452 + Psyr_0611 0.21 +0.3
701,452 + Psyr_0611 0.21 -0.1
701,452 + Psyr_0611 0.21 -0.3
701,453 - Psyr_0611 0.21 -0.8
701,453 - Psyr_0611 0.21 -0.5
701,453 - Psyr_0611 0.21 +0.3
701,511 - Psyr_0611 0.29 -1.3
701,511 - Psyr_0611 0.29 -1.0
701,516 + Psyr_0611 0.30 -0.5
701,517 - Psyr_0611 0.30 +0.5
701,517 - Psyr_0611 0.30 -3.4
701,642 + Psyr_0611 0.48 +0.7
701,643 - Psyr_0611 0.48 -0.3
701,647 - Psyr_0611 0.48 -2.4
701,647 - Psyr_0611 0.48 +0.5
701,773 - Psyr_0611 0.66 -1.5
701,773 - Psyr_0611 0.66 -0.8
701,773 - Psyr_0611 0.66 -1.7
701,773 - Psyr_0611 0.66 +0.7
701,773 - Psyr_0611 0.66 +1.5
701,773 - Psyr_0611 0.66 -0.3
701,773 - Psyr_0611 0.66 -0.5
701,773 - Psyr_0611 0.66 -1.3
701,837 - Psyr_0611 0.75 +0.5
701,936 - Psyr_0611 0.89 -2.4
701,936 - Psyr_0611 0.89 -2.1
701,946 - +0.3
702,007 - -2.5
702,163 + Psyr_0612 0.11 -1.7
702,163 + Psyr_0612 0.11 +0.9
702,164 - Psyr_0612 0.11 -0.2
702,164 - Psyr_0612 0.11 +0.1
702,164 - Psyr_0612 0.11 -0.4
702,164 - Psyr_0612 0.11 -1.3
702,173 - Psyr_0612 0.12 -0.8
702,234 - Psyr_0612 0.20 -0.2
702,234 - Psyr_0612 0.20 -0.6
702,351 + Psyr_0612 0.36 -0.8
702,351 + Psyr_0612 0.36 +0.9
702,351 + Psyr_0612 0.36 +0.1
702,351 + Psyr_0612 0.36 -0.7
702,352 - Psyr_0612 0.36 -0.4
702,352 - Psyr_0612 0.36 +0.1
702,352 - Psyr_0612 0.36 -0.1
702,352 - Psyr_0612 0.36 -0.4
702,352 - Psyr_0612 0.36 +0.6
702,411 + Psyr_0612 0.44 +0.3
702,411 + Psyr_0612 0.44 -0.7
702,411 + Psyr_0612 0.44 -0.5
702,425 + Psyr_0612 0.46 +1.1
702,426 - Psyr_0612 0.46 +0.9
702,427 + Psyr_0612 0.46 +0.9
702,427 + Psyr_0612 0.46 -0.1
702,427 + Psyr_0612 0.46 +0.2
702,427 + Psyr_0612 0.46 -0.1
702,427 + Psyr_0612 0.46 +0.6
702,427 + Psyr_0612 0.46 -0.1
702,427 + Psyr_0612 0.46 -0.2
702,427 + Psyr_0612 0.46 -0.3
702,427 + Psyr_0612 0.46 -0.1
702,428 - Psyr_0612 0.46 +0.4
702,428 - Psyr_0612 0.46 -0.6
702,428 - Psyr_0612 0.46 -0.5
702,428 - Psyr_0612 0.46 +0.7
702,436 - Psyr_0612 0.47 +0.3
702,563 + Psyr_0612 0.64 +0.0
702,591 + Psyr_0612 0.67 +0.6
702,591 + Psyr_0612 0.67 +0.7
702,591 + Psyr_0612 0.67 -0.0
702,591 + Psyr_0612 0.67 -0.5
702,592 - Psyr_0612 0.67 +1.5
702,592 - Psyr_0612 0.67 -0.1
702,592 - Psyr_0612 0.67 +0.5
702,592 - Psyr_0612 0.67 +2.9
702,592 - Psyr_0612 0.67 -1.3
702,592 - Psyr_0612 0.67 -0.1
702,592 - Psyr_0612 0.67 -0.8
702,592 - Psyr_0612 0.67 +1.5
702,592 - Psyr_0612 0.67 +0.5
702,592 - Psyr_0612 0.67 +0.1
702,593 + Psyr_0612 0.68 -1.8
702,593 + Psyr_0612 0.68 +0.3
702,594 - Psyr_0612 0.68 -0.5
702,594 - Psyr_0612 0.68 -1.5
702,672 + Psyr_0612 0.78 -0.7
702,672 + Psyr_0612 0.78 +0.7
702,673 - Psyr_0612 0.78 -0.0
702,673 - Psyr_0612 0.78 -1.1
702,673 - Psyr_0612 0.78 -0.9
702,726 + Psyr_0612 0.85 +0.1
702,726 + Psyr_0612 0.85 +0.6
702,756 + Psyr_0612 0.89 -0.4
702,756 + Psyr_0612 0.89 +0.3
702,756 + Psyr_0612 0.89 +0.5
702,756 + Psyr_0612 0.89 +0.1
702,756 + Psyr_0612 0.89 -0.4
702,756 + Psyr_0612 0.89 -0.7
702,756 + Psyr_0612 0.89 +0.5
702,757 - Psyr_0612 0.89 -0.7
702,757 - Psyr_0612 0.89 -0.8
702,757 - Psyr_0612 0.89 +0.0
702,757 - Psyr_0612 0.89 -0.4
702,757 - Psyr_0612 0.89 +0.7
702,757 - Psyr_0612 0.89 +1.3
702,888 + -0.3
703,119 + Psyr_0613 0.45 +2.2
703,120 - Psyr_0613 0.45 +0.1
703,165 + Psyr_0613 0.53 +1.5
703,166 - Psyr_0613 0.53 -0.7
703,166 - Psyr_0613 0.53 -0.2
703,189 + Psyr_0613 0.57 +0.2
703,189 + Psyr_0613 0.57 +0.5
703,190 - Psyr_0613 0.57 +0.9
703,190 - Psyr_0613 0.57 +0.9
703,190 - Psyr_0613 0.57 -0.3
703,190 - Psyr_0613 0.57 -0.1
703,190 - Psyr_0613 0.57 +1.9
703,190 - Psyr_0613 0.57 -0.4
703,190 - Psyr_0613 0.57 +0.8
703,190 - Psyr_0613 0.57 -1.0
703,190 - Psyr_0613 0.57 -0.8
703,416 + -2.6
703,523 + -0.8
703,524 - +0.0
703,524 - +2.1
703,524 - -0.8
703,691 + Psyr_0614 0.36 -0.6
703,691 + Psyr_0614 0.36 +0.1
703,691 + Psyr_0614 0.36 -0.1
703,691 + Psyr_0614 0.36 -2.3
703,692 - Psyr_0614 0.36 +0.9
703,692 - Psyr_0614 0.36 +0.6
703,692 - Psyr_0614 0.36 -0.7
703,709 + Psyr_0614 0.38 +0.4
703,709 + Psyr_0614 0.38 -0.5
703,772 + Psyr_0614 0.48 +0.0
703,773 - Psyr_0614 0.49 -0.7
703,773 - Psyr_0614 0.49 +0.1
703,773 - Psyr_0614 0.49 -0.3

Or see this region's nucleotide sequence