Strain Fitness in Pseudomonas putida KT2440 around PP_2716

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
3,104,698	-		PP_2714	0.90	+0.9
3,104,776	+				-0.5
3,104,814	-				+0.1
3,104,880	+				-0.8
3,104,880	+				+1.7
3,104,954	+		PP_2715	0.15	+0.2
3,104,995	+		PP_2715	0.21	-0.3
3,104,999	-		PP_2715	0.21	-0.5
3,105,041	-		PP_2715	0.27	-0.2
3,105,325	-		PP_2715	0.68	-0.7
3,105,414	+		PP_2715	0.80	-0.1
3,105,414	+		PP_2715	0.80	+1.5
3,105,454	+		PP_2715	0.86	+0.7
3,105,697	-		PP_2716	0.28	-0.9
3,105,697	-		PP_2716	0.28	-0.4
3,105,873	+		PP_2716	0.65	-0.6
3,105,874	-		PP_2716	0.66	-1.3
3,106,143	+				+0.3
3,106,143	+				-0.3
3,106,143	+				+0.1
3,106,144	-				+1.5
3,106,144	-				+1.1
3,106,147	-				-1.4
3,106,261	-		PP_2717	0.15	+0.1
3,106,277	+		PP_2717	0.17	-1.1
3,106,467	+		PP_2717	0.31	+0.6
3,106,479	+		PP_2717	0.32	-0.1
3,106,480	-		PP_2717	0.32	-1.2
3,106,480	-		PP_2717	0.32	-1.1
3,106,480	-		PP_2717	0.32	-0.2
3,106,731	+				+0.1
3,106,766	+		PP_2717	0.55	-0.1
3,107,034	-		PP_2717	0.76	-0.9