Strain Fitness in Pseudomonas putida KT2440 around PP_1760

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
1,960,744	+		PP_1758	0.61	+0.6
1,960,745	-		PP_1758	0.61	-0.4
1,960,745	-		PP_1758	0.61	+0.3
1,960,745	-		PP_1758	0.61	+0.6
1,960,745	-		PP_1758	0.61	-0.5
1,960,774	+		PP_1758	0.64	-0.4
1,960,775	-		PP_1758	0.64	+0.6
1,960,782	+		PP_1758	0.65	+0.7
1,960,801	+		PP_1758	0.67	+1.2
1,961,087	-				+0.2
1,961,089	+				-0.5
1,961,089	+				-2.4
1,961,090	-				+0.9
1,961,090	-				+0.1
1,961,131	+				+0.3
1,961,131	+				+2.0
1,961,131	+				-0.2
1,961,131	+				-1.0
1,961,131	+				+2.6
1,961,132	-				-0.2
1,961,284	+		PP_1759	0.23	+1.2
1,961,284	+		PP_1759	0.23	+0.1
1,961,284	+		PP_1759	0.23	-0.1
1,961,285	-		PP_1759	0.23	-0.0
1,961,285	-		PP_1759	0.23	+0.1
1,961,285	-		PP_1759	0.23	+0.5
1,961,464	+		PP_1759	0.53	+1.0
1,961,465	-		PP_1759	0.53	-0.4
1,961,465	-		PP_1759	0.53	+0.7
1,961,680	+		PP_1759	0.89	+1.2
1,961,748	+				+1.4
1,961,748	+				+0.8
1,961,783	+				-0.4
1,961,783	+				+0.8
1,961,784	-				+0.4
1,962,155	-		PP_1760	0.23	+0.3
1,962,170	+		PP_1760	0.24	+0.3
1,962,362	+		PP_1760	0.34	+0.9
1,962,497	+		PP_1760	0.41	+1.4
1,962,731	-		PP_1760	0.54	+1.6
1,962,740	+		PP_1760	0.55	-0.7
1,962,741	-		PP_1760	0.55	+0.5
1,962,741	-		PP_1760	0.55	+0.2
1,962,746	+		PP_1760	0.55	-0.5
1,962,746	+		PP_1760	0.55	-0.1
1,962,746	+		PP_1760	0.55	-1.0
1,962,746	+		PP_1760	0.55	-0.1
1,962,750	-		PP_1760	0.55	-0.0
1,962,750	-		PP_1760	0.55	+1.1
1,962,750	-		PP_1760	0.55	+0.8
1,962,750	-		PP_1760	0.55	+1.6
1,962,990	+		PP_1760	0.68	-0.2
1,962,990	+		PP_1760	0.68	+0.4
1,962,991	-		PP_1760	0.68	-0.7
1,962,991	-		PP_1760	0.68	+0.1
1,962,991	-		PP_1760	0.68	-0.0
1,963,305	+		PP_1760	0.85	+0.2
1,963,305	+		PP_1760	0.85	+2.6
1,963,305	+		PP_1760	0.85	+0.1
1,963,306	-		PP_1760	0.86	+1.2
1,963,306	-		PP_1760	0.86	+0.6
1,963,306	-		PP_1760	0.86	-0.4
1,963,370	+		PP_1760	0.89	+0.3
1,963,371	-		PP_1760	0.89	+0.7
1,963,533	+				-0.4
1,963,533	+				+1.6
1,963,535	+				+0.5
1,963,535	+				+0.4
1,963,536	-				+0.3
1,963,536	-				-1.1
1,963,547	+				-0.1
1,963,548	-				+1.2
1,963,727	+				+1.6
1,963,727	+				-2.4
1,963,727	+				+0.5
1,963,738	+				+0.0
1,963,745	+				-0.7
1,963,828	-				-0.1
1,963,834	+				+1.7
1,963,834	+				+0.2
1,963,960	+				+1.0
1,963,961	-				+0.5
1,963,962	+				+0.6
1,963,962	+				+0.6
1,963,962	+				-1.0
1,963,962	+				+1.0
1,963,962	+				-0.2
1,963,962	+				+0.8
1,963,962	+				+1.1
1,963,963	-				+0.1
1,963,963	-				+0.7
1,963,963	-				+0.1
1,963,984	+				-0.2
1,963,984	+				+0.7
1,963,985	-				-0.3
1,963,985	-				-0.6
1,963,985	-				+0.3
1,964,032	+				+0.7
1,964,032	+				+0.4
1,964,032	+				-0.3
1,964,032	+				-0.9
1,964,032	+				+1.6
1,964,032	+				+0.1
1,964,032	+				+1.1
1,964,032	+				-0.1
1,964,032	+				+0.6
1,964,033	-				+0.3
1,964,033	-				+0.5
1,964,033	-				+0.4
1,964,033	-				+0.3
1,964,035	+				+0.7
1,964,035	+				+1.6
1,964,035	+				-0.2
1,964,035	+				+1.0
1,964,047	+		PP_1761	0.10	+0.4
1,964,048	-		PP_1761	0.10	-0.2
1,964,097	+		PP_1761	0.12	+0.8
1,964,251	+		PP_1761	0.18	+0.3
1,964,273	-		PP_1761	0.19	+1.2
1,964,293	+		PP_1761	0.20	-1.4
1,964,293	+		PP_1761	0.20	+0.1
1,964,294	-		PP_1761	0.20	+1.2
1,964,294	-		PP_1761	0.20	-0.9
1,964,312	+		PP_1761	0.21	+2.6
1,964,312	+		PP_1761	0.21	+0.5
1,964,313	-		PP_1761	0.21	+0.6
1,964,313	-		PP_1761	0.21	+0.8
1,964,313	-		PP_1761	0.21	+0.5