Strain Fitness in Pseudomonas putida KT2440 around PP_1729

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
1,929,198	-		PP_1728	0.58	-0.6
1,929,422	+				-0.2
1,929,422	+		PP_1728	0.69	+2.6
1,929,496	+		PP_1728	0.72	-0.2
1,929,497	-		PP_1728	0.72	+1.4
1,929,641	-		PP_1728	0.79	-1.6
1,930,030	-				+0.0
1,930,123	+				+0.3
1,930,123	+				-0.4
1,930,131	+				-0.5
1,930,131	+				+2.3
1,930,131	+				-0.6
1,930,132	-				+1.3
1,930,132	-				+0.0
1,930,177	+		PP_1729	0.23	-1.3
1,930,206	-		PP_1729	0.37	-1.1
1,930,434	+				-1.4
1,930,435	-				+0.3
1,930,435	-				+2.6
1,930,460	+				-2.2
1,930,460	+				+0.4
1,930,460	+				+0.8
1,930,474	+				-0.2
1,930,474	+				+0.6
1,930,475	-				-0.4
1,930,475	-				-0.8
1,930,645	+		PP_1730	0.16	-0.2
1,930,847	+		PP_1730	0.32	-0.1
1,930,848	-		PP_1730	0.32	-0.7
1,931,084	+		PP_1730	0.50	-1.1
1,931,084	+		PP_1730	0.50	-0.7
1,931,085	-		PP_1730	0.50	+2.6