Strain Fitness in Pseudomonas putida KT2440 around PP_0555

Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0554 and PP_0555 are separated by 33 nucleotidesPP_0555 and PP_0556 are separated by 22 nucleotides PP_0554: PP_0554 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta, at 642,983 to 644,005 _0554 PP_0555: PP_0555 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 644,039 to 645,016 _0555 PP_0556: PP_0556 - Acetoin catabolism protein, at 645,039 to 646,094 _0556 Position (kb) 644 645 646Strain fitness (log2 ratio) -2 -1 0 1 2at 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.053 kb on + strandat 643.054 kb on - strandat 643.054 kb on - strandat 643.054 kb on - strandat 643.091 kb on - strand, within PP_0554at 643.350 kb on + strand, within PP_0554at 643.351 kb on - strand, within PP_0554at 643.355 kb on - strand, within PP_0554at 643.413 kb on + strand, within PP_0554at 643.413 kb on + strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.414 kb on - strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.446 kb on + strand, within PP_0554at 643.447 kb on - strand, within PP_0554at 643.521 kb on + strand, within PP_0554at 643.522 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.621 kb on - strand, within PP_0554at 643.668 kb on + strand, within PP_0554at 643.668 kb on + strand, within PP_0554at 643.669 kb on - strand, within PP_0554at 643.839 kb on + strand, within PP_0554at 643.839 kb on + strand, within PP_0554at 643.840 kb on - strand, within PP_0554at 643.931 kb on + strandat 643.931 kb on + strandat 643.931 kb on + strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.932 kb on - strandat 643.987 kb on - strandat 644.055 kb on + strandat 644.259 kb on + strand, within PP_0555at 644.289 kb on + strand, within PP_0555at 644.289 kb on + strand, within PP_0555at 644.289 kb on + strand, within PP_0555at 644.292 kb on + strand, within PP_0555at 644.370 kb on + strand, within PP_0555at 644.371 kb on - strand, within PP_0555at 644.371 kb on - strand, within PP_0555at 644.372 kb on + strand, within PP_0555at 644.485 kb on - strand, within PP_0555at 644.754 kb on + strand, within PP_0555at 644.755 kb on - strand, within PP_0555at 644.889 kb on + strand, within PP_0555at 644.890 kb on - strand, within PP_0555at 644.890 kb on - strand, within PP_0555at 644.976 kb on + strandat 644.976 kb on + strandat 644.977 kb on - strandat 644.999 kb on - strandat 644.999 kb on - strandat 644.999 kb on - strandat 645.349 kb on - strand, within PP_0556at 645.561 kb on + strand, within PP_0556at 645.561 kb on + strand, within PP_0556at 645.562 kb on - strand, within PP_0556

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.
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643,053 + +2.6
643,053 + -1.1
643,053 + -0.9
643,053 + +0.3
643,053 + -0.3
643,053 + -0.2
643,053 + +1.1
643,053 + -0.1
643,053 + -0.2
643,054 - +0.2
643,054 - -0.6
643,054 - +0.3
643,091 - PP_0554 0.11 +0.5
643,350 + PP_0554 0.36 -2.0
643,351 - PP_0554 0.36 -0.2
643,355 - PP_0554 0.36 -2.5
643,413 + PP_0554 0.42 -0.4
643,413 + PP_0554 0.42 -0.0
643,414 - PP_0554 0.42 +1.1
643,414 - PP_0554 0.42 -2.6
643,414 - PP_0554 0.42 +1.6
643,414 - PP_0554 0.42 -0.5
643,414 - PP_0554 0.42 -0.2
643,446 + PP_0554 0.45 -0.0
643,446 + PP_0554 0.45 +0.8
643,446 + PP_0554 0.45 +0.9
643,447 - PP_0554 0.45 +1.3
643,521 + PP_0554 0.53 -0.4
643,522 - PP_0554 0.53 -0.2
643,621 - PP_0554 0.62 +1.3
643,621 - PP_0554 0.62 -1.6
643,621 - PP_0554 0.62 -1.2
643,621 - PP_0554 0.62 -1.9
643,621 - PP_0554 0.62 +0.5
643,621 - PP_0554 0.62 +0.2
643,621 - PP_0554 0.62 -2.1
643,668 + PP_0554 0.67 +0.2
643,668 + PP_0554 0.67 -1.0
643,669 - PP_0554 0.67 -0.3
643,839 + PP_0554 0.84 +0.1
643,839 + PP_0554 0.84 +0.1
643,840 - PP_0554 0.84 -1.0
643,931 + +0.2
643,931 + +0.9
643,931 + +0.8
643,932 - -0.6
643,932 - +1.6
643,932 - +0.2
643,932 - +0.8
643,987 - +0.2
644,055 + +0.1
644,259 + PP_0555 0.22 +0.8
644,289 + PP_0555 0.26 +0.5
644,289 + PP_0555 0.26 +0.5
644,289 + PP_0555 0.26 +1.2
644,292 + PP_0555 0.26 -0.6
644,370 + PP_0555 0.34 +0.5
644,371 - PP_0555 0.34 -0.5
644,371 - PP_0555 0.34 +1.2
644,372 + PP_0555 0.34 -1.1
644,485 - PP_0555 0.46 +0.3
644,754 + PP_0555 0.73 +0.1
644,755 - PP_0555 0.73 +1.9
644,889 + PP_0555 0.87 -1.8
644,890 - PP_0555 0.87 -1.7
644,890 - PP_0555 0.87 -0.4
644,976 + -0.7
644,976 + -0.5
644,977 - +0.3
644,999 - -0.2
644,999 - -0.0
644,999 - +1.0
645,349 - PP_0556 0.29 -0.9
645,561 + PP_0556 0.49 -0.6
645,561 + PP_0556 0.49 -0.0
645,562 - PP_0556 0.50 -0.8

Or see this region's nucleotide sequence