Strain Fitness in Agrobacterium fabrum C58 around Atu5408

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5407 and Atu5408 are separated by 103 nucleotidesAtu5408 and Atu5409 are separated by 3 nucleotides Atu5407: Atu5407 - hypothetical protein, at 401,642 to 402,772 Atu5407 Atu5408: Atu5408 - ABC transporter membrane spanning protein (amino acid), at 402,876 to 403,730 Atu5408 Atu5409: Atu5409 - ABC transporter substrate binding protein (amino acid), at 403,734 to 404,669 Atu5409 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 401.887 kb on + strand, within Atu5407at 401.974 kb on - strand, within Atu5407at 402.077 kb on - strand, within Atu5407at 402.077 kb on - strand, within Atu5407at 402.082 kb on + strand, within Atu5407at 402.090 kb on - strand, within Atu5407at 402.116 kb on - strand, within Atu5407at 402.126 kb on - strand, within Atu5407at 402.128 kb on + strand, within Atu5407at 402.136 kb on - strand, within Atu5407at 402.185 kb on + strand, within Atu5407at 402.200 kb on - strand, within Atu5407at 402.219 kb on + strand, within Atu5407at 402.222 kb on - strand, within Atu5407at 402.222 kb on - strand, within Atu5407at 402.282 kb on - strand, within Atu5407at 402.293 kb on - strand, within Atu5407at 402.295 kb on + strand, within Atu5407at 402.303 kb on + strand, within Atu5407at 402.335 kb on - strand, within Atu5407at 402.351 kb on + strand, within Atu5407at 402.366 kb on + strand, within Atu5407at 402.384 kb on - strand, within Atu5407at 402.443 kb on + strand, within Atu5407at 402.638 kb on - strand, within Atu5407at 402.642 kb on + strand, within Atu5407at 402.653 kb on + strand, within Atu5407at 402.803 kb on - strandat 402.856 kb on + strandat 402.864 kb on - strandat 402.925 kb on + strandat 402.930 kb on + strandat 402.990 kb on - strand, within Atu5408at 402.990 kb on - strand, within Atu5408at 403.026 kb on - strand, within Atu5408at 403.132 kb on + strand, within Atu5408at 403.159 kb on + strand, within Atu5408at 403.167 kb on - strand, within Atu5408at 403.167 kb on - strand, within Atu5408at 403.167 kb on - strand, within Atu5408at 403.176 kb on - strand, within Atu5408at 403.176 kb on - strand, within Atu5408at 403.177 kb on - strand, within Atu5408at 403.200 kb on - strand, within Atu5408at 403.200 kb on - strand, within Atu5408at 403.202 kb on + strand, within Atu5408at 403.260 kb on + strand, within Atu5408at 403.413 kb on + strand, within Atu5408at 403.446 kb on + strand, within Atu5408at 403.446 kb on + strand, within Atu5408at 403.454 kb on - strand, within Atu5408at 403.558 kb on + strand, within Atu5408at 403.622 kb on - strand, within Atu5408at 403.668 kb on + strandat 403.668 kb on + strandat 403.675 kb on + strandat 403.675 kb on - strandat 403.676 kb on - strandat 403.731 kb on + strandat 403.740 kb on - strandat 403.784 kb on + strandat 403.798 kb on - strandat 403.838 kb on - strand, within Atu5409at 403.842 kb on + strand, within Atu5409at 403.850 kb on - strand, within Atu5409at 403.882 kb on - strand, within Atu5409at 403.932 kb on + strand, within Atu5409at 404.006 kb on - strand, within Atu5409at 404.086 kb on + strand, within Atu5409at 404.094 kb on - strand, within Atu5409at 404.129 kb on - strand, within Atu5409at 404.173 kb on - strand, within Atu5409at 404.250 kb on - strand, within Atu5409at 404.302 kb on + strand, within Atu5409at 404.315 kb on - strand, within Atu5409at 404.317 kb on + strand, within Atu5409at 404.323 kb on - strand, within Atu5409at 404.347 kb on - strand, within Atu5409at 404.372 kb on + strand, within Atu5409at 404.373 kb on + strand, within Atu5409at 404.380 kb on - strand, within Atu5409at 404.382 kb on + strand, within Atu5409at 404.426 kb on - strand, within Atu5409at 404.536 kb on + strand, within Atu5409at 404.583 kb on + strandat 404.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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401,887 + Atu5407 0.22 +0.1
401,974 - Atu5407 0.29 +1.4
402,077 - Atu5407 0.38 +1.0
402,077 - Atu5407 0.38 +0.7
402,082 + Atu5407 0.39 -0.6
402,090 - Atu5407 0.40 -1.9
402,116 - Atu5407 0.42 +3.9
402,126 - Atu5407 0.43 -0.1
402,128 + Atu5407 0.43 +0.7
402,136 - Atu5407 0.44 +1.3
402,185 + Atu5407 0.48 +1.5
402,200 - Atu5407 0.49 -0.3
402,219 + Atu5407 0.51 -0.0
402,222 - Atu5407 0.51 -2.7
402,222 - Atu5407 0.51 +0.2
402,282 - Atu5407 0.57 +0.9
402,293 - Atu5407 0.58 +0.4
402,295 + Atu5407 0.58 -0.1
402,303 + Atu5407 0.58 -0.9
402,335 - Atu5407 0.61 -0.4
402,351 + Atu5407 0.63 -0.2
402,366 + Atu5407 0.64 +0.3
402,384 - Atu5407 0.66 -1.3
402,443 + Atu5407 0.71 +0.3
402,638 - Atu5407 0.88 -0.9
402,642 + Atu5407 0.88 +0.3
402,653 + Atu5407 0.89 +1.9
402,803 - -0.9
402,856 + +0.6
402,864 - -0.2
402,925 + -0.3
402,930 + +0.2
402,990 - Atu5408 0.13 +0.4
402,990 - Atu5408 0.13 +0.4
403,026 - Atu5408 0.18 +1.7
403,132 + Atu5408 0.30 +0.2
403,159 + Atu5408 0.33 -1.6
403,167 - Atu5408 0.34 -0.0
403,167 - Atu5408 0.34 -0.3
403,167 - Atu5408 0.34 +6.3
403,176 - Atu5408 0.35 +0.4
403,176 - Atu5408 0.35 +0.7
403,177 - Atu5408 0.35 -0.7
403,200 - Atu5408 0.38 +0.1
403,200 - Atu5408 0.38 -0.4
403,202 + Atu5408 0.38 -0.4
403,260 + Atu5408 0.45 +0.5
403,413 + Atu5408 0.63 -1.3
403,446 + Atu5408 0.67 +0.5
403,446 + Atu5408 0.67 -0.5
403,454 - Atu5408 0.68 -0.3
403,558 + Atu5408 0.80 -0.4
403,622 - Atu5408 0.87 +0.1
403,668 + +1.0
403,668 + -0.1
403,675 + -0.2
403,675 - -1.8
403,676 - +0.5
403,731 + +0.8
403,740 - -0.5
403,784 + -0.7
403,798 - -0.3
403,838 - Atu5409 0.11 +0.5
403,842 + Atu5409 0.12 -0.4
403,850 - Atu5409 0.12 +0.5
403,882 - Atu5409 0.16 +0.4
403,932 + Atu5409 0.21 +1.4
404,006 - Atu5409 0.29 +2.6
404,086 + Atu5409 0.38 +0.3
404,094 - Atu5409 0.38 -2.7
404,129 - Atu5409 0.42 -2.2
404,173 - Atu5409 0.47 -0.3
404,250 - Atu5409 0.55 +0.1
404,302 + Atu5409 0.61 -1.9
404,315 - Atu5409 0.62 -0.3
404,317 + Atu5409 0.62 -1.0
404,323 - Atu5409 0.63 -0.1
404,347 - Atu5409 0.65 +0.7
404,372 + Atu5409 0.68 +1.3
404,373 + Atu5409 0.68 -0.0
404,380 - Atu5409 0.69 -0.6
404,382 + Atu5409 0.69 +0.2
404,426 - Atu5409 0.74 -0.0
404,536 + Atu5409 0.86 +0.4
404,583 + -0.9
404,601 - +0.4

Or see this region's nucleotide sequence