Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3457 and Atu3458 are separated by 4 nucleotides Atu3458 and Atu3459 overlap by 1 nucleotides Atu3459 and Atu3460 are separated by 303 nucleotides Atu3460 and Atu3461 are separated by 27 nucleotides
Atu3457: Atu3457 - ABC transporter permease, at 505,415 to 506,251
Atu3457
Atu3458: Atu3458 - ABC transporter permease, at 506,256 to 507,143
Atu3458
Atu3459: Atu3459 - ABC transporter permease, at 507,143 to 508,165
Atu3459
Atu3460: Atu3460 - RhtB family transporter, at 508,469 to 509,101
Atu3460
Atu3461: Atu3461 - GntR family transcriptional regulator, at 509,129 to 509,857
Atu3461
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 506.160 kb on - strand, within Atu3457 at 506.185 kb on + strand at 506.221 kb on + strand at 506.252 kb on + strand at 506.324 kb on + strand at 506.379 kb on - strand, within Atu3458 at 506.388 kb on - strand, within Atu3458 at 506.398 kb on - strand, within Atu3458 at 506.482 kb on + strand, within Atu3458 at 506.558 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.567 kb on + strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.597 kb on + strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.653 kb on - strand, within Atu3458 at 506.684 kb on + strand, within Atu3458 at 506.687 kb on - strand, within Atu3458 at 506.692 kb on - strand, within Atu3458 at 506.720 kb on + strand, within Atu3458 at 506.853 kb on + strand, within Atu3458 at 506.883 kb on - strand, within Atu3458 at 507.228 kb on + strand at 507.238 kb on - strand at 507.296 kb on + strand, within Atu3459 at 507.314 kb on - strand, within Atu3459 at 507.362 kb on + strand, within Atu3459 at 507.390 kb on + strand, within Atu3459 at 507.395 kb on + strand, within Atu3459 at 507.397 kb on + strand, within Atu3459 at 507.405 kb on - strand, within Atu3459 at 507.469 kb on + strand, within Atu3459 at 507.499 kb on - strand, within Atu3459 at 507.521 kb on - strand, within Atu3459 at 507.563 kb on - strand, within Atu3459 at 507.643 kb on - strand, within Atu3459 at 507.676 kb on - strand, within Atu3459 at 507.708 kb on + strand, within Atu3459 at 507.711 kb on - strand, within Atu3459 at 507.747 kb on - strand, within Atu3459 at 507.754 kb on + strand, within Atu3459 at 507.808 kb on - strand, within Atu3459 at 507.824 kb on + strand, within Atu3459 at 507.832 kb on - strand, within Atu3459 at 507.858 kb on + strand, within Atu3459 at 508.008 kb on - strand, within Atu3459 at 508.058 kb on + strand, within Atu3459 at 508.460 kb on - strand at 508.484 kb on + strand at 508.489 kb on + strand at 508.492 kb on - strand at 508.530 kb on + strand at 508.538 kb on - strand, within Atu3460 at 508.538 kb on - strand, within Atu3460 at 508.538 kb on - strand, within Atu3460 at 508.597 kb on + strand, within Atu3460 at 508.653 kb on - strand, within Atu3460 at 508.653 kb on - strand, within Atu3460 at 508.673 kb on + strand, within Atu3460 at 508.757 kb on - strand, within Atu3460 at 508.780 kb on + strand, within Atu3460 at 508.851 kb on - strand, within Atu3460 at 509.001 kb on - strand, within Atu3460 at 509.058 kb on + strand at 509.059 kb on - strand at 509.078 kb on - strand at 509.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 506,160 - Atu3457 0.89 +0.9 506,185 + -0.0 506,221 + -0.8 506,252 + +0.1 506,324 + -0.2 506,379 - Atu3458 0.14 +0.2 506,388 - Atu3458 0.15 -0.8 506,398 - Atu3458 0.16 +0.1 506,482 + Atu3458 0.25 -0.1 506,558 - Atu3458 0.34 -0.8 506,563 - Atu3458 0.35 -0.1 506,563 - Atu3458 0.35 -0.3 506,567 + Atu3458 0.35 -1.1 506,574 - Atu3458 0.36 +0.4 506,574 - Atu3458 0.36 -0.2 506,597 + Atu3458 0.38 -0.8 506,616 - Atu3458 0.41 +0.1 506,616 - Atu3458 0.41 +0.8 506,653 - Atu3458 0.45 -0.6 506,684 + Atu3458 0.48 +0.0 506,687 - Atu3458 0.49 -0.7 506,692 - Atu3458 0.49 +0.2 506,720 + Atu3458 0.52 -0.8 506,853 + Atu3458 0.67 -0.6 506,883 - Atu3458 0.71 +0.4 507,228 + +2.8 507,238 - -1.3 507,296 + Atu3459 0.15 +0.3 507,314 - Atu3459 0.17 -0.8 507,362 + Atu3459 0.21 -0.4 507,390 + Atu3459 0.24 +0.2 507,395 + Atu3459 0.25 -0.0 507,397 + Atu3459 0.25 -0.9 507,405 - Atu3459 0.26 +0.2 507,469 + Atu3459 0.32 -2.1 507,499 - Atu3459 0.35 +0.1 507,521 - Atu3459 0.37 +0.3 507,563 - Atu3459 0.41 -0.2 507,643 - Atu3459 0.49 -0.1 507,676 - Atu3459 0.52 -0.3 507,708 + Atu3459 0.55 -0.9 507,711 - Atu3459 0.56 -0.5 507,747 - Atu3459 0.59 -0.1 507,754 + Atu3459 0.60 -0.2 507,808 - Atu3459 0.65 -2.2 507,824 + Atu3459 0.67 -0.1 507,832 - Atu3459 0.67 -1.0 507,858 + Atu3459 0.70 +0.3 508,008 - Atu3459 0.85 -0.7 508,058 + Atu3459 0.89 +0.0 508,460 - -1.8 508,484 + -0.0 508,489 + +0.1 508,492 - -1.6 508,530 + +0.1 508,538 - Atu3460 0.11 +0.8 508,538 - Atu3460 0.11 +1.6 508,538 - Atu3460 0.11 +0.8 508,597 + Atu3460 0.20 +0.5 508,653 - Atu3460 0.29 +0.6 508,653 - Atu3460 0.29 -0.7 508,673 + Atu3460 0.32 -0.1 508,757 - Atu3460 0.45 -0.1 508,780 + Atu3460 0.49 -0.5 508,851 - Atu3460 0.60 +0.1 509,001 - Atu3460 0.84 -0.4 509,058 + +0.0 509,059 - +2.2 509,078 - -1.1 509,148 - -1.8
Or see this region's nucleotide sequence