Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8030 and Atu3328 are separated by 15 nucleotides Atu3328 and Atu3329 are separated by 146 nucleotides Atu3329 and Atu3330 are separated by 144 nucleotides
Atu8030: Atu8030 - hypothetical protein, at 362,198 to 362,380
Atu8030
Atu3328: Atu3328 - aldehyde dehydrogenase, at 362,396 to 362,944
Atu3328
Atu3329: Atu3329 - beta alanine--pyruvate transaminase, at 363,091 to 364,425
Atu3329
Atu3330: Atu3330 - methyl-accepting chemotaxis protein, at 364,570 to 366,387
Atu3330
Position (kb) 363
364
365 Strain fitness (log2 ratio) -2
-1
0
1
2 at 362.370 kb on + strand at 362.423 kb on + strand at 362.678 kb on + strand, within Atu3328 at 362.715 kb on - strand, within Atu3328 at 362.715 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.725 kb on - strand, within Atu3328 at 362.860 kb on + strand, within Atu3328 at 362.868 kb on - strand, within Atu3328 at 362.880 kb on - strand, within Atu3328 at 362.945 kb on + strand at 362.945 kb on + strand at 362.953 kb on - strand at 362.953 kb on - strand at 362.983 kb on + strand at 363.034 kb on + strand at 363.088 kb on + strand at 363.162 kb on + strand at 363.162 kb on + strand at 363.165 kb on - strand at 363.170 kb on - strand at 363.232 kb on + strand, within Atu3329 at 363.240 kb on - strand, within Atu3329 at 363.313 kb on - strand, within Atu3329 at 363.319 kb on + strand, within Atu3329 at 363.327 kb on - strand, within Atu3329 at 363.401 kb on + strand, within Atu3329 at 363.454 kb on - strand, within Atu3329 at 363.474 kb on - strand, within Atu3329 at 363.497 kb on + strand, within Atu3329 at 363.684 kb on - strand, within Atu3329 at 363.686 kb on + strand, within Atu3329 at 363.711 kb on - strand, within Atu3329 at 363.801 kb on + strand, within Atu3329 at 363.847 kb on + strand, within Atu3329 at 363.943 kb on + strand, within Atu3329 at 363.954 kb on + strand, within Atu3329 at 363.982 kb on + strand, within Atu3329 at 363.990 kb on - strand, within Atu3329 at 364.000 kb on + strand, within Atu3329 at 364.156 kb on + strand, within Atu3329 at 364.274 kb on + strand, within Atu3329 at 364.381 kb on - strand at 364.405 kb on + strand at 364.413 kb on - strand at 364.695 kb on - strand at 364.756 kb on + strand, within Atu3330 at 364.936 kb on + strand, within Atu3330 at 365.372 kb on - strand, within Atu3330 at 365.372 kb on - strand, within Atu3330
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 362,370 + -0.4 362,423 + +0.6 362,678 + Atu3328 0.51 +0.7 362,715 - Atu3328 0.58 -0.2 362,715 - Atu3328 0.58 +0.5 362,725 - Atu3328 0.60 +0.1 362,725 - Atu3328 0.60 +1.1 362,725 - Atu3328 0.60 +0.0 362,860 + Atu3328 0.85 +0.0 362,868 - Atu3328 0.86 +0.6 362,880 - Atu3328 0.88 +0.9 362,945 + -0.8 362,945 + -0.0 362,953 - +0.1 362,953 - +0.6 362,983 + +0.7 363,034 + -0.3 363,088 + +0.1 363,162 + -0.3 363,162 + -0.5 363,165 - +0.2 363,170 - -0.2 363,232 + Atu3329 0.11 -0.1 363,240 - Atu3329 0.11 +0.0 363,313 - Atu3329 0.17 -0.3 363,319 + Atu3329 0.17 -1.3 363,327 - Atu3329 0.18 -0.6 363,401 + Atu3329 0.23 +0.7 363,454 - Atu3329 0.27 +1.6 363,474 - Atu3329 0.29 -0.0 363,497 + Atu3329 0.30 -2.4 363,684 - Atu3329 0.44 -0.1 363,686 + Atu3329 0.45 -0.6 363,711 - Atu3329 0.46 +0.1 363,801 + Atu3329 0.53 +0.0 363,847 + Atu3329 0.57 +0.1 363,943 + Atu3329 0.64 -1.0 363,954 + Atu3329 0.65 +2.0 363,982 + Atu3329 0.67 -0.4 363,990 - Atu3329 0.67 -2.6 364,000 + Atu3329 0.68 -0.2 364,156 + Atu3329 0.80 -1.3 364,274 + Atu3329 0.89 -0.2 364,381 - -0.8 364,405 + -0.6 364,413 - -0.7 364,695 - +0.3 364,756 + Atu3330 0.10 -2.0 364,936 + Atu3330 0.20 -1.2 365,372 - Atu3330 0.44 +1.2 365,372 - Atu3330 0.44 -0.5
Or see this region's nucleotide sequence