Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3302 and Atu3303 are separated by 60 nucleotides Atu3303 and Atu8186 are separated by 24 nucleotides
Atu3302: Atu3302 - cellulose biosynthesis protein, at 329,494 to 331,140
Atu3302
Atu3303: Atu3303 - cellulose synthesis protein, at 331,201 to 332,355
Atu3303
Atu8186: Atu8186 - cellulose synthesis protein, at 332,380 to 334,626
Atu8186
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.348 kb on + strand, within Atu3302 at 330.515 kb on + strand, within Atu3302 at 330.523 kb on - strand, within Atu3302 at 330.549 kb on - strand, within Atu3302 at 330.599 kb on + strand, within Atu3302 at 330.698 kb on - strand, within Atu3302 at 330.734 kb on - strand, within Atu3302 at 330.861 kb on + strand, within Atu3302 at 330.892 kb on - strand, within Atu3302 at 330.973 kb on + strand, within Atu3302 at 331.041 kb on + strand at 331.121 kb on + strand at 331.151 kb on - strand at 331.323 kb on + strand, within Atu3303 at 331.375 kb on + strand, within Atu3303 at 331.375 kb on + strand, within Atu3303 at 331.385 kb on - strand, within Atu3303 at 331.413 kb on - strand, within Atu3303 at 331.475 kb on - strand, within Atu3303 at 331.565 kb on - strand, within Atu3303 at 331.592 kb on - strand, within Atu3303 at 331.624 kb on + strand, within Atu3303 at 331.714 kb on + strand, within Atu3303 at 331.785 kb on - strand, within Atu3303 at 331.803 kb on - strand, within Atu3303 at 331.855 kb on + strand, within Atu3303 at 331.899 kb on + strand, within Atu3303 at 331.901 kb on + strand, within Atu3303 at 331.965 kb on + strand, within Atu3303 at 331.965 kb on + strand, within Atu3303 at 331.973 kb on - strand, within Atu3303 at 331.973 kb on - strand, within Atu3303 at 332.028 kb on + strand, within Atu3303 at 332.086 kb on - strand, within Atu3303 at 332.221 kb on + strand, within Atu3303 at 332.397 kb on - strand at 332.436 kb on + strand at 332.463 kb on + strand at 332.617 kb on + strand, within Atu8186 at 332.748 kb on - strand, within Atu8186 at 333.020 kb on + strand, within Atu8186 at 333.067 kb on + strand, within Atu8186 at 333.110 kb on - strand, within Atu8186 at 333.259 kb on + strand, within Atu8186 at 333.267 kb on - strand, within Atu8186 at 333.320 kb on - strand, within Atu8186
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 330,348 + Atu3302 0.52 -1.0 330,515 + Atu3302 0.62 +2.0 330,523 - Atu3302 0.62 -0.3 330,549 - Atu3302 0.64 +1.2 330,599 + Atu3302 0.67 -0.4 330,698 - Atu3302 0.73 -0.4 330,734 - Atu3302 0.75 -1.2 330,861 + Atu3302 0.83 +0.2 330,892 - Atu3302 0.85 -1.2 330,973 + Atu3302 0.90 -0.6 331,041 + +0.2 331,121 + +1.3 331,151 - +0.3 331,323 + Atu3303 0.11 -0.6 331,375 + Atu3303 0.15 +0.4 331,375 + Atu3303 0.15 -0.4 331,385 - Atu3303 0.16 -0.5 331,413 - Atu3303 0.18 -0.8 331,475 - Atu3303 0.24 -0.8 331,565 - Atu3303 0.32 -1.1 331,592 - Atu3303 0.34 +0.4 331,624 + Atu3303 0.37 +0.1 331,714 + Atu3303 0.44 -1.4 331,785 - Atu3303 0.51 -1.1 331,803 - Atu3303 0.52 -0.5 331,855 + Atu3303 0.57 -0.4 331,899 + Atu3303 0.60 -0.1 331,901 + Atu3303 0.61 -0.6 331,965 + Atu3303 0.66 -0.4 331,965 + Atu3303 0.66 -1.3 331,973 - Atu3303 0.67 -2.9 331,973 - Atu3303 0.67 -0.0 332,028 + Atu3303 0.72 -0.2 332,086 - Atu3303 0.77 -0.6 332,221 + Atu3303 0.88 -1.9 332,397 - -0.6 332,436 + +0.1 332,463 + -0.3 332,617 + Atu8186 0.11 +0.0 332,748 - Atu8186 0.16 -0.5 333,020 + Atu8186 0.28 -1.4 333,067 + Atu8186 0.31 +0.4 333,110 - Atu8186 0.32 +0.8 333,259 + Atu8186 0.39 -0.2 333,267 - Atu8186 0.39 +0.3 333,320 - Atu8186 0.42 -0.7
Or see this region's nucleotide sequence