Strain Fitness in Agrobacterium fabrum C58 around Atu2633

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2632 and Atu2633 are separated by 63 nucleotidesAtu2633 and Atu2634 are separated by 44 nucleotidesAtu2634 and Atu2635 are separated by 69 nucleotides Atu2632: Atu2632 - dihydrolipoamide dehydrogenase, at 2,615,578 to 2,616,984 Atu2632 Atu2633: Atu2633 - RhtB family transporter, at 2,617,048 to 2,617,662 Atu2633 Atu2634: Atu2634 - hypothetical protein, at 2,617,707 to 2,618,120 Atu2634 Atu2635: Atu2635 - dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 2,618,190 to 2,619,422 Atu2635 Position (kb) 2617 2618Strain fitness (log2 ratio) -1 0 1 2 3 4at 2617.160 kb on + strand, within Atu2633at 2617.191 kb on + strand, within Atu2633at 2617.202 kb on - strand, within Atu2633at 2617.713 kb on - strandat 2617.753 kb on - strand, within Atu2634at 2617.787 kb on - strand, within Atu2634at 2618.015 kb on - strand, within Atu2634at 2618.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,617,160 + Atu2633 0.18 -0.9
2,617,191 + Atu2633 0.23 +0.5
2,617,202 - Atu2633 0.25 +4.0
2,617,713 - -0.5
2,617,753 - Atu2634 0.11 -0.8
2,617,787 - Atu2634 0.19 -0.7
2,618,015 - Atu2634 0.74 -0.3
2,618,135 - -0.4

Or see this region's nucleotide sequence