Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0916 and Atu0917 are separated by 302 nucleotides Atu0917 and Atu0918 overlap by 8 nucleotides Atu0918 and Atu0919 are separated by 21 nucleotides
Atu0916: Atu0916 - transcriptional regulator, at 905,301 to 905,729
Atu0916
Atu0917: Atu0917 - hypothetical protein, at 906,032 to 906,454
Atu0917
Atu0918: Atu0918 - hypothetical protein, at 906,447 to 907,283
Atu0918
Atu0919: Atu0919 - hypothetical protein, at 907,305 to 907,721
Atu0919
Position (kb) 906
907 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 905.221 kb on + strand at 905.433 kb on + strand, within Atu0916 at 905.772 kb on + strand at 905.788 kb on - strand at 906.142 kb on + strand, within Atu0917 at 906.254 kb on + strand, within Atu0917 at 906.270 kb on - strand, within Atu0917 at 906.324 kb on - strand, within Atu0917 at 906.324 kb on - strand, within Atu0917 at 906.351 kb on + strand, within Atu0917 at 906.383 kb on - strand, within Atu0917 at 906.385 kb on + strand, within Atu0917 at 906.393 kb on - strand, within Atu0917 at 906.403 kb on - strand, within Atu0917 at 906.711 kb on - strand, within Atu0918 at 906.742 kb on + strand, within Atu0918 at 906.747 kb on + strand, within Atu0918 at 906.750 kb on - strand, within Atu0918 at 906.800 kb on + strand, within Atu0918 at 906.800 kb on + strand, within Atu0918 at 906.808 kb on - strand, within Atu0918 at 906.832 kb on + strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 907.001 kb on + strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.083 kb on + strand, within Atu0918 at 907.173 kb on - strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.220 kb on + strand at 907.220 kb on + strand at 907.228 kb on - strand at 907.228 kb on - strand at 907.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 905,221 + +0.1 905,433 + Atu0916 0.31 -0.3 905,772 + -0.3 905,788 - +0.2 906,142 + Atu0917 0.26 +0.3 906,254 + Atu0917 0.52 -0.4 906,270 - Atu0917 0.56 +0.0 906,324 - Atu0917 0.69 -0.1 906,324 - Atu0917 0.69 +0.0 906,351 + Atu0917 0.75 -0.4 906,383 - Atu0917 0.83 -1.8 906,385 + Atu0917 0.83 -0.5 906,393 - Atu0917 0.85 +1.7 906,403 - Atu0917 0.88 -0.1 906,711 - Atu0918 0.32 +0.4 906,742 + Atu0918 0.35 +0.4 906,747 + Atu0918 0.36 -1.4 906,750 - Atu0918 0.36 +2.5 906,800 + Atu0918 0.42 -0.9 906,800 + Atu0918 0.42 +5.4 906,808 - Atu0918 0.43 -0.1 906,832 + Atu0918 0.46 -0.6 906,999 - Atu0918 0.66 -0.7 906,999 - Atu0918 0.66 -1.7 907,001 + Atu0918 0.66 +0.3 907,004 - Atu0918 0.67 -1.3 907,004 - Atu0918 0.67 +0.5 907,083 + Atu0918 0.76 -0.6 907,173 - Atu0918 0.87 +0.4 907,175 + Atu0918 0.87 +0.7 907,175 + Atu0918 0.87 +0.3 907,220 + +0.2 907,220 + -0.3 907,228 - +0.2 907,228 - -0.1 907,239 - -0.3
Or see this region's nucleotide sequence