Strain Fitness in Pseudomonas putida KT2440 around PP_5457

Experiment: Adaptation in M9 media timecourse 4; day 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0756 and PP_0757 are separated by 20 nucleotidesPP_0757 and PP_5457 overlap by 1 nucleotidesPP_5457 and PP_0758 are separated by 15 nucleotidesPP_0758 and PP_0759 are separated by 158 nucleotides PP_0756: PP_0756 - conserved protein of unknown function, at 871,890 to 873,161 _0756 PP_0757: PP_0757 - conserved protein of unknown function, at 873,182 to 873,367 _0757 PP_5457: PP_5457 - conserved protein of unknown function, at 873,367 to 873,627 _5457 PP_0758: PP_0758 - conserved protein of unknown function, at 873,643 to 874,263 _0758 PP_0759: PP_0759 - conserved exported protein of unknown function, at 874,422 to 875,261 _0759 Position (kb) 873 874Strain fitness (log2 ratio) -2 -1 0 1at 873.081 kb on - strandat 873.086 kb on - strandat 873.086 kb on - strandat 873.089 kb on - strandat 873.089 kb on - strandat 873.089 kb on - strandat 873.089 kb on - strandat 873.089 kb on - strandat 873.089 kb on - strandat 873.154 kb on - strandat 873.156 kb on - strandat 873.161 kb on + strandat 873.162 kb on - strandat 873.162 kb on - strandat 873.162 kb on - strandat 873.162 kb on - strandat 873.162 kb on - strandat 873.162 kb on - strandat 873.201 kb on - strand, within PP_0757at 873.201 kb on - strand, within PP_0757at 873.201 kb on - strand, within PP_0757at 873.201 kb on - strand, within PP_0757at 873.213 kb on - strand, within PP_0757at 873.267 kb on - strand, within PP_0757at 873.376 kb on - strandat 873.376 kb on - strandat 873.376 kb on - strandat 873.376 kb on - strandat 873.376 kb on - strandat 873.376 kb on - strandat 873.379 kb on + strandat 873.380 kb on - strandat 873.380 kb on - strandat 873.380 kb on - strandat 873.380 kb on - strandat 873.446 kb on + strand, within PP_5457at 873.446 kb on + strand, within PP_5457at 873.447 kb on - strand, within PP_5457at 873.447 kb on - strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.562 kb on + strand, within PP_5457at 873.563 kb on - strand, within PP_5457at 873.563 kb on - strand, within PP_5457at 873.612 kb on + strandat 873.625 kb on + strandat 873.625 kb on + strandat 873.625 kb on + strandat 873.656 kb on - strandat 873.656 kb on - strandat 873.729 kb on + strand, within PP_0758at 873.729 kb on + strand, within PP_0758at 873.729 kb on + strand, within PP_0758at 873.729 kb on + strand, within PP_0758at 873.730 kb on - strand, within PP_0758at 873.730 kb on - strand, within PP_0758at 873.730 kb on - strand, within PP_0758at 873.731 kb on + strand, within PP_0758at 873.731 kb on + strand, within PP_0758at 873.731 kb on + strand, within PP_0758at 873.732 kb on - strand, within PP_0758at 873.934 kb on + strand, within PP_0758at 873.935 kb on - strand, within PP_0758at 874.001 kb on - strand, within PP_0758at 874.001 kb on - strand, within PP_0758at 874.043 kb on + strand, within PP_0758at 874.304 kb on + strandat 874.304 kb on + strandat 874.304 kb on + strandat 874.305 kb on - strandat 874.326 kb on + strandat 874.326 kb on + strandat 874.327 kb on - strandat 874.385 kb on - strandat 874.410 kb on - strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.512 kb on - strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.606 kb on - strand, within PP_0759

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Per-strain Table

Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 4; day 3
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873,081 - -0.1
873,086 - -1.7
873,086 - -0.1
873,089 - -0.5
873,089 - -0.1
873,089 - +0.1
873,089 - +1.5
873,089 - +0.5
873,089 - -0.3
873,154 - -0.5
873,156 - -0.2
873,161 + -1.8
873,162 - -1.5
873,162 - -0.7
873,162 - -0.2
873,162 - -0.0
873,162 - -0.1
873,162 - -0.2
873,201 - PP_0757 0.10 -0.1
873,201 - PP_0757 0.10 -0.4
873,201 - PP_0757 0.10 -0.8
873,201 - PP_0757 0.10 -0.7
873,213 - PP_0757 0.17 +0.0
873,267 - PP_0757 0.46 +0.6
873,376 - -0.7
873,376 - +0.1
873,376 - +0.2
873,376 - -0.7
873,376 - +0.2
873,376 - +0.5
873,379 + -0.5
873,380 - -0.5
873,380 - +0.5
873,380 - -0.1
873,380 - +0.6
873,446 + PP_5457 0.30 +0.1
873,446 + PP_5457 0.30 +0.2
873,447 - PP_5457 0.31 -0.8
873,447 - PP_5457 0.31 +0.4
873,562 + PP_5457 0.75 -0.6
873,562 + PP_5457 0.75 +0.3
873,562 + PP_5457 0.75 +0.2
873,562 + PP_5457 0.75 -0.4
873,563 - PP_5457 0.75 -2.2
873,563 - PP_5457 0.75 -2.3
873,612 + -0.2
873,625 + -2.0
873,625 + +0.1
873,625 + -0.1
873,656 - +1.5
873,656 - -1.3
873,729 + PP_0758 0.14 -0.2
873,729 + PP_0758 0.14 -0.3
873,729 + PP_0758 0.14 -0.9
873,729 + PP_0758 0.14 +1.5
873,730 - PP_0758 0.14 -1.5
873,730 - PP_0758 0.14 -1.8
873,730 - PP_0758 0.14 +0.6
873,731 + PP_0758 0.14 +0.9
873,731 + PP_0758 0.14 +0.2
873,731 + PP_0758 0.14 +0.6
873,732 - PP_0758 0.14 -0.3
873,934 + PP_0758 0.47 -0.8
873,935 - PP_0758 0.47 -0.6
874,001 - PP_0758 0.58 -0.1
874,001 - PP_0758 0.58 -0.7
874,043 + PP_0758 0.64 +1.5
874,304 + -0.1
874,304 + +0.3
874,304 + +0.1
874,305 - +0.2
874,326 + -1.2
874,326 + +0.7
874,327 - +0.9
874,385 - +0.1
874,410 - +0.7
874,448 + +0.0
874,448 + -1.3
874,448 + -0.7
874,449 - +0.5
874,449 - +0.5
874,449 - -0.6
874,449 - +0.9
874,449 - -1.5
874,511 + PP_0759 0.11 +0.4
874,511 + PP_0759 0.11 +0.3
874,511 + PP_0759 0.11 -0.3
874,512 - PP_0759 0.11 +1.5
874,551 + PP_0759 0.15 -0.5
874,551 + PP_0759 0.15 +0.4
874,551 + PP_0759 0.15 +0.1
874,552 - PP_0759 0.15 +1.2
874,552 - PP_0759 0.15 -0.1
874,552 - PP_0759 0.15 -1.0
874,552 - PP_0759 0.15 -0.5
874,552 - PP_0759 0.15 -0.1
874,552 - PP_0759 0.15 +0.3
874,552 - PP_0759 0.15 +0.0
874,593 + PP_0759 0.20 +0.9
874,593 + PP_0759 0.20 +0.8
874,594 - PP_0759 0.20 -0.4
874,594 - PP_0759 0.20 -0.2
874,606 - PP_0759 0.22 -0.9

Or see this region's nucleotide sequence