Strain Fitness in Pseudomonas putida KT2440 around PP_5041

Experiment: Adaptation in M9 media timecourse 4; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 3
5,743,272	+				+1.1
5,743,272	+				-0.6
5,743,273	-				-1.2
5,743,280	+				-0.7
5,743,348	+				+0.4
5,743,348	+				-0.2
5,743,349	-				+0.3
5,743,349	-				-0.3
5,743,445	+				-2.0
5,743,445	+				-1.2
5,743,565	+				-1.2
5,743,565	+				-0.8
5,743,565	+				+0.8
5,743,565	+				+1.5
5,743,566	-				-2.8
5,743,601	+				-0.5
5,743,632	-				-0.4
5,743,910	-		PP_5041	0.20	-0.3
5,743,964	+		PP_5041	0.22	-2.1
5,743,965	-		PP_5041	0.22	-1.7
5,744,070	-		PP_5041	0.27	-1.5
5,744,137	+				+0.5
5,744,137	+		PP_5041	0.29	-1.1
5,744,138	-		PP_5041	0.30	-1.0
5,744,147	+		PP_5041	0.30	-1.3
5,744,147	+		PP_5041	0.30	-1.7
5,744,148	-		PP_5041	0.30	-1.3
5,744,148	-		PP_5041	0.30	-2.9
5,744,200	-		PP_5041	0.32	-0.7
5,744,200	-		PP_5041	0.32	-1.6
5,744,205	+		PP_5041	0.32	-0.5
5,744,221	+		PP_5041	0.33	-0.4
5,744,222	-		PP_5041	0.33	-1.3
5,744,433	-		PP_5041	0.42	-0.8
5,744,433	-		PP_5041	0.42	-0.1
5,744,451	+		PP_5041	0.42	-2.2
5,744,451	+		PP_5041	0.42	+0.8
5,744,452	-		PP_5041	0.42	-0.8
5,744,680	-		PP_5041	0.52	-2.4
5,744,684	+		PP_5041	0.52	-0.5
5,744,684	+		PP_5041	0.52	-1.2
5,744,684	+		PP_5041	0.52	+1.5
5,744,685	-		PP_5041	0.52	-2.2
5,744,685	-		PP_5041	0.52	-0.9
5,744,699	+		PP_5041	0.52	-1.7
5,744,778	+		PP_5041	0.56	+0.0
5,744,778	+		PP_5041	0.56	-0.7
5,744,778	+		PP_5041	0.56	-1.9
5,744,778	+		PP_5041	0.56	-1.3
5,744,778	+		PP_5041	0.56	-3.1
5,744,778	+		PP_5041	0.56	-1.3
5,744,778	+		PP_5041	0.56	-1.0
5,744,779	-		PP_5041	0.56	-3.0
5,744,779	-		PP_5041	0.56	-0.3
5,744,779	-		PP_5041	0.56	+0.3
5,744,779	-		PP_5041	0.56	-0.6
5,744,790	-		PP_5041	0.56	-0.8
5,744,996	+		PP_5041	0.65	-0.2
5,745,209	+		PP_5041	0.73	-1.5
5,745,244	+		PP_5041	0.75	-1.4
5,745,244	+		PP_5041	0.75	-1.3
5,745,244	+		PP_5041	0.75	-3.4
5,745,244	+		PP_5041	0.75	-1.3
5,745,244	+		PP_5041	0.75	-2.0
5,745,245	-		PP_5041	0.75	-0.7
5,745,245	-		PP_5041	0.75	-1.9
5,745,245	-		PP_5041	0.75	-0.7
5,745,309	-		PP_5041	0.77	-1.5
5,745,456	+		PP_5041	0.83	+0.8
5,745,457	-		PP_5041	0.83	-0.4
5,745,457	-		PP_5041	0.83	-3.3
5,745,614	+		PP_5041	0.90	-0.8
5,745,653	+				-0.3
5,745,654	-				-1.4
5,745,791	+				-2.0
5,745,791	+				+0.5
5,745,791	+				-1.0
5,745,791	+				-1.8
5,745,792	-				-2.5
5,745,792	-				-1.3
5,745,792	-				-0.4
5,745,792	-				+1.5
5,745,808	+				-0.8
5,745,809	-				-2.6
5,745,809	-				-1.0
5,745,850	-				-0.8
5,745,913	+				+1.1
5,745,913	+				-2.2
5,745,913	+				-0.5
5,745,914	-				+0.6
5,745,939	+				-0.4
5,745,941	-				+0.4
5,746,043	-				+0.5
5,746,043	-				+0.6
5,746,044	+				-1.7
5,746,044	+				+0.8
5,746,045	-				+1.0
5,746,045	-				+0.7
5,746,045	-				+0.8
5,746,045	-				+0.4
5,746,106	+		PP_5042	0.18	-1.2
5,746,328	+		PP_5042	0.70	+0.2
5,746,329	-		PP_5042	0.70	+1.1
5,746,329	-		PP_5042	0.70	-0.4
5,746,329	-		PP_5042	0.70	-0.2
5,746,361	+		PP_5042	0.78	-0.5
5,746,361	+		PP_5042	0.78	-0.6
5,746,361	+		PP_5042	0.78	-0.7
5,746,361	+		PP_5042	0.78	-0.1
5,746,418	+				-0.5
5,746,471	-				+1.2
5,746,672	+				+0.5
5,746,754	+		PP_5043	0.14	+0.0
5,746,754	+		PP_5043	0.14	+0.3
5,746,755	-		PP_5043	0.14	-0.0
5,746,755	-		PP_5043	0.14	-1.0
5,746,810	+		PP_5043	0.18	+0.2
5,746,810	+		PP_5043	0.18	-0.7
5,746,810	+		PP_5043	0.18	+0.3
5,746,811	-		PP_5043	0.18	+0.5
5,746,822	+		PP_5043	0.19	+0.4
5,746,823	-		PP_5043	0.19	-0.1