Strain Fitness in Pseudomonas putida KT2440 around PP_4793

Experiment: Adaptation in M9 media timecourse 4; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 3
5,454,732	+				+0.1
5,454,805	+				+1.1
5,454,805	+				-1.7
5,454,806	-				+1.5
5,454,815	+				+0.1
5,454,815	+				+0.2
5,454,815	+				+0.2
5,454,816	-				-0.5
5,454,816	-				+0.8
5,454,816	-				+1.5
5,454,816	-				+0.3
5,454,816	-				+0.1
5,454,816	-				-1.5
5,454,816	-				-0.7
5,454,816	-				-1.5
5,454,820	-				+0.2
5,454,820	-				+0.6
5,454,820	-				-0.5
5,454,835	+				+0.8
5,455,471	-		PP_4792	0.84	-0.2
5,455,475	+		PP_4792	0.85	-0.8
5,455,475	+		PP_4792	0.85	+0.0
5,455,623	+				+0.3
5,455,623	+				-1.3
5,455,624	-				-0.3
5,455,624	-				-1.1
5,455,680	+				-0.3
5,455,824	+		PP_4793	0.31	-0.9
5,455,825	-		PP_4793	0.31	-1.0
5,456,024	+				-0.8
5,456,024	+				-0.5
5,456,061	+				-0.0
5,456,061	+				+0.4
5,456,062	-				+0.4
5,456,062	-				-0.4
5,456,067	+				-1.6
5,456,067	+				-0.5
5,456,067	+				-0.3
5,456,067	+				-1.5
5,456,067	+				-0.8
5,456,068	-				+0.9
5,456,068	-				-0.9
5,456,068	-				+2.8
5,456,068	-				+1.9
5,456,068	-				+1.5
5,456,068	-				-1.0
5,456,089	+				+1.5
5,456,171	+				-0.2
5,456,171	+				+0.9
5,456,171	+				+0.2
5,456,171	+				-0.7
5,456,176	+				+0.9
5,456,176	+				-0.5