Strain Fitness in Pseudomonas putida KT2440 around PP_4571

Experiment: Adaptation in M9 media timecourse 4; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 3
5,189,549	-		PP_4570	0.23	+0.4
5,189,549	-		PP_4570	0.23	-0.3
5,189,575	+		PP_4570	0.26	-0.1
5,189,649	+		PP_4570	0.34	+0.3
5,189,649	+		PP_4570	0.34	-0.6
5,189,650	-		PP_4570	0.34	-0.3
5,189,650	-		PP_4570	0.34	-0.4
5,189,650	-		PP_4570	0.34	+0.0
5,189,691	+		PP_4570	0.39	-0.8
5,189,691	+		PP_4570	0.39	-0.4
5,189,709	+		PP_4570	0.40	-0.5
5,189,709	+		PP_4570	0.40	+0.2
5,189,710	-		PP_4570	0.41	+0.1
5,189,710	-		PP_4570	0.41	-0.7
5,189,710	-		PP_4570	0.41	-0.2
5,189,907	+		PP_4570	0.62	+0.2
5,189,919	+		PP_4570	0.63	+0.2
5,189,969	-		PP_4570	0.68	-0.3
5,189,989	+		PP_4570	0.70	+0.2
5,189,989	+		PP_4570	0.70	-0.0
5,189,991	+		PP_4570	0.71	-0.1
5,189,991	+		PP_4570	0.71	-0.5
5,189,991	+		PP_4570	0.71	+0.9
5,189,992	-		PP_4570	0.71	-0.1
5,189,992	-		PP_4570	0.71	-0.6
5,189,992	-		PP_4570	0.71	-0.9
5,189,992	-		PP_4570	0.71	-0.5
5,189,992	-		PP_4570	0.71	-0.8
5,190,084	+		PP_4570	0.81	+1.0
5,190,084	+		PP_4570	0.81	+0.2
5,190,085	-		PP_4570	0.81	+0.7
5,190,115	-		PP_4570	0.84	+0.2
5,190,115	-		PP_4570	0.84	-0.2
5,190,129	+		PP_4570	0.85	+3.1
5,190,129	+		PP_4570	0.85	-0.9
5,190,129	+		PP_4570	0.85	+0.8
5,190,130	-		PP_4570	0.85	-0.1
5,190,333	-				-0.2
5,190,494	+				-0.6
5,190,521	-				+0.0
5,190,534	+				-0.2
5,190,597	+		PP_4571	0.16	-0.7
5,190,834	+		PP_4571	0.41	+0.2
5,190,835	-		PP_4571	0.41	+0.6
5,190,835	-		PP_4571	0.41	-0.1
5,190,835	-		PP_4571	0.41	+0.3
5,190,845	+		PP_4571	0.42	+0.3
5,190,846	-		PP_4571	0.42	-0.4
5,190,995	+		PP_4571	0.57	+1.7
5,190,996	-		PP_4571	0.57	+0.1
5,190,996	-		PP_4571	0.57	-0.3
5,190,996	-		PP_4571	0.57	+0.1
5,190,996	-		PP_4571	0.57	+0.4
5,190,996	-		PP_4571	0.57	-1.3
5,191,072	+		PP_4571	0.65	+1.1
5,191,072	+		PP_4571	0.65	-0.0
5,191,073	-		PP_4571	0.65	-0.5
5,191,151	+		PP_4571	0.73	+0.6
5,191,405	-				-1.7
5,191,405	-				+0.5
5,191,458	+				-0.0
5,191,480	-				+0.5
5,191,627	+				-0.4
5,191,628	-				+0.5
5,191,643	-				-1.8
5,191,688	+		PP_4572	0.13	+0.9
5,191,689	-		PP_4572	0.13	+0.7
5,191,724	-		PP_4572	0.17	+0.3
5,191,772	+		PP_4572	0.21	+1.5
5,191,829	-		PP_4572	0.26	+0.7
5,191,893	+		PP_4572	0.32	-1.3
5,191,894	-		PP_4572	0.32	+0.1
5,191,924	-		PP_4572	0.35	-0.6
5,191,924	-		PP_4572	0.35	-0.3
5,192,150	+		PP_4572	0.56	-0.0
5,192,151	-		PP_4572	0.56	+0.2
5,192,337	+		PP_4572	0.74	+0.5
5,192,337	+		PP_4572	0.74	+0.1
5,192,337	+		PP_4572	0.74	-1.7
5,192,338	-		PP_4572	0.74	+1.0
5,192,338	-		PP_4572	0.74	+0.8
5,192,338	-		PP_4572	0.74	-0.4
5,192,339	+		PP_4572	0.74	-0.8
5,192,340	-		PP_4572	0.74	+0.3
5,192,340	-		PP_4572	0.74	+0.7
5,192,340	-		PP_4572	0.74	+0.5