Strain Fitness in Pseudomonas putida KT2440 around PP_4507

Experiment: Adaptation in M9 media timecourse 4; day 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4505 and PP_4506 are separated by 130 nucleotidesPP_4506 and PP_4507 are separated by 102 nucleotidesPP_4507 and PP_4508 overlap by 44 nucleotides PP_4505: PP_4505 - Sensor histidine kinase, at 5,118,227 to 5,119,567 _4505 PP_4506: PP_4506 - Nitroreductase family protein, at 5,119,698 to 5,120,255 _4506 PP_4507: PP_4507 - potassium transporter, at 5,120,358 to 5,121,812 _4507 PP_4508: PP_4508 - putative transcriptional regulator, AraC family, at 5,121,769 to 5,122,749 _4508 Position (kb) 5120 5121 5122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5119.612 kb on + strandat 5119.699 kb on + strandat 5119.699 kb on + strandat 5119.699 kb on + strandat 5119.700 kb on - strandat 5119.700 kb on - strandat 5119.712 kb on + strandat 5119.712 kb on + strandat 5119.712 kb on + strandat 5119.712 kb on + strandat 5119.713 kb on - strandat 5119.713 kb on - strandat 5119.713 kb on - strandat 5119.715 kb on + strandat 5119.715 kb on + strandat 5119.777 kb on + strand, within PP_4506at 5119.777 kb on + strand, within PP_4506at 5119.777 kb on + strand, within PP_4506at 5119.777 kb on + strand, within PP_4506at 5119.777 kb on + strand, within PP_4506at 5119.778 kb on - strand, within PP_4506at 5119.778 kb on - strand, within PP_4506at 5119.778 kb on - strand, within PP_4506at 5119.778 kb on - strand, within PP_4506at 5119.778 kb on - strand, within PP_4506at 5119.784 kb on - strand, within PP_4506at 5119.784 kb on - strand, within PP_4506at 5119.857 kb on - strand, within PP_4506at 5119.857 kb on - strand, within PP_4506at 5120.111 kb on + strand, within PP_4506at 5120.112 kb on - strand, within PP_4506at 5120.292 kb on + strandat 5120.293 kb on - strandat 5120.299 kb on + strandat 5120.300 kb on - strandat 5120.300 kb on - strandat 5120.300 kb on - strandat 5120.300 kb on - strandat 5120.300 kb on - strandat 5120.300 kb on - strandat 5120.315 kb on + strandat 5120.315 kb on + strandat 5120.315 kb on + strandat 5120.316 kb on - strandat 5120.316 kb on - strandat 5120.316 kb on - strandat 5120.319 kb on + strandat 5120.319 kb on + strandat 5120.319 kb on + strandat 5120.319 kb on + strandat 5120.320 kb on - strandat 5120.320 kb on - strandat 5120.320 kb on - strandat 5120.374 kb on + strandat 5120.374 kb on + strandat 5120.375 kb on - strandat 5120.412 kb on - strandat 5120.554 kb on + strand, within PP_4507at 5120.554 kb on + strand, within PP_4507at 5120.555 kb on - strand, within PP_4507at 5120.555 kb on - strand, within PP_4507at 5120.555 kb on - strand, within PP_4507at 5120.555 kb on - strand, within PP_4507at 5120.555 kb on - strand, within PP_4507at 5120.577 kb on + strand, within PP_4507at 5120.577 kb on + strand, within PP_4507at 5120.577 kb on + strand, within PP_4507at 5120.577 kb on + strand, within PP_4507at 5120.577 kb on + strand, within PP_4507at 5120.577 kb on + strand, within PP_4507at 5120.578 kb on - strand, within PP_4507at 5120.578 kb on - strand, within PP_4507at 5120.578 kb on - strand, within PP_4507at 5120.655 kb on + strand, within PP_4507at 5120.656 kb on - strandat 5120.780 kb on + strand, within PP_4507at 5120.922 kb on + strand, within PP_4507at 5120.923 kb on - strand, within PP_4507at 5120.938 kb on + strand, within PP_4507at 5121.009 kb on - strand, within PP_4507at 5121.085 kb on + strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.123 kb on + strand, within PP_4507at 5121.124 kb on - strand, within PP_4507at 5121.127 kb on + strand, within PP_4507at 5121.128 kb on - strand, within PP_4507at 5121.228 kb on + strand, within PP_4507at 5121.228 kb on + strand, within PP_4507at 5121.234 kb on + strand, within PP_4507at 5121.234 kb on + strand, within PP_4507at 5121.235 kb on - strand, within PP_4507at 5121.235 kb on - strand, within PP_4507at 5121.235 kb on - strand, within PP_4507at 5121.327 kb on + strand, within PP_4507at 5121.342 kb on - strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.659 kb on - strand, within PP_4507at 5121.845 kb on + strandat 5121.920 kb on + strand, within PP_4508at 5121.921 kb on - strand, within PP_4508at 5121.959 kb on + strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5122.301 kb on + strand, within PP_4508at 5122.301 kb on + strand, within PP_4508at 5122.301 kb on + strand, within PP_4508at 5122.302 kb on - strand, within PP_4508at 5122.302 kb on - strand, within PP_4508at 5122.302 kb on - strand, within PP_4508at 5122.466 kb on + strand, within PP_4508at 5122.467 kb on - strand, within PP_4508at 5122.524 kb on - strand, within PP_4508at 5122.577 kb on + strand, within PP_4508

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Per-strain Table

Position Strand Gene LocusTag Fraction Adaptation in M9 media timecourse 4; day 3
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5,119,612 + +0.2
5,119,699 + -1.2
5,119,699 + +1.5
5,119,699 + -0.7
5,119,700 - -1.0
5,119,700 - -0.4
5,119,712 + +0.5
5,119,712 + -1.0
5,119,712 + -1.3
5,119,712 + -0.3
5,119,713 - -0.5
5,119,713 - -0.1
5,119,713 - -0.3
5,119,715 + -0.2
5,119,715 + +0.0
5,119,777 + PP_4506 0.14 -0.5
5,119,777 + PP_4506 0.14 -0.6
5,119,777 + PP_4506 0.14 +0.3
5,119,777 + PP_4506 0.14 +0.4
5,119,777 + PP_4506 0.14 -0.8
5,119,778 - PP_4506 0.14 +0.3
5,119,778 - PP_4506 0.14 +0.3
5,119,778 - PP_4506 0.14 -0.3
5,119,778 - PP_4506 0.14 -0.5
5,119,778 - PP_4506 0.14 -0.8
5,119,784 - PP_4506 0.15 -0.2
5,119,784 - PP_4506 0.15 +0.4
5,119,857 - PP_4506 0.28 +0.9
5,119,857 - PP_4506 0.28 -0.8
5,120,111 + PP_4506 0.74 -0.0
5,120,112 - PP_4506 0.74 -0.6
5,120,292 + +0.6
5,120,293 - -0.9
5,120,299 + -0.2
5,120,300 - +0.5
5,120,300 - -2.7
5,120,300 - +0.1
5,120,300 - -1.8
5,120,300 - +0.5
5,120,300 - -0.6
5,120,315 + -0.2
5,120,315 + +0.1
5,120,315 + +0.2
5,120,316 - -0.8
5,120,316 - +0.5
5,120,316 - +1.0
5,120,319 + -0.1
5,120,319 + +0.3
5,120,319 + +0.4
5,120,319 + +0.0
5,120,320 - -0.9
5,120,320 - +1.2
5,120,320 - -1.0
5,120,374 + -2.0
5,120,374 + -1.5
5,120,375 - -0.8
5,120,412 - -0.7
5,120,554 + PP_4507 0.13 +0.1
5,120,554 + PP_4507 0.13 -0.8
5,120,555 - PP_4507 0.14 +0.3
5,120,555 - PP_4507 0.14 -1.0
5,120,555 - PP_4507 0.14 +0.5
5,120,555 - PP_4507 0.14 -2.5
5,120,555 - PP_4507 0.14 -1.1
5,120,577 + PP_4507 0.15 -0.2
5,120,577 + PP_4507 0.15 -0.2
5,120,577 + PP_4507 0.15 +1.5
5,120,577 + PP_4507 0.15 -1.1
5,120,577 + PP_4507 0.15 -1.7
5,120,577 + PP_4507 0.15 -0.1
5,120,578 - PP_4507 0.15 +1.5
5,120,578 - PP_4507 0.15 -3.2
5,120,578 - PP_4507 0.15 +1.5
5,120,655 + PP_4507 0.20 -1.2
5,120,656 - -0.1
5,120,780 + PP_4507 0.29 +0.2
5,120,922 + PP_4507 0.39 -0.8
5,120,923 - PP_4507 0.39 -0.5
5,120,938 + PP_4507 0.40 +0.3
5,121,009 - PP_4507 0.45 +0.5
5,121,085 + PP_4507 0.50 -0.8
5,121,086 - PP_4507 0.50 +0.5
5,121,086 - PP_4507 0.50 +3.1
5,121,086 - PP_4507 0.50 -0.8
5,121,086 - PP_4507 0.50 -1.1
5,121,123 + PP_4507 0.53 +2.5
5,121,124 - PP_4507 0.53 -1.0
5,121,127 + PP_4507 0.53 +2.8
5,121,128 - PP_4507 0.53 -2.1
5,121,228 + PP_4507 0.60 -1.1
5,121,228 + PP_4507 0.60 -0.8
5,121,234 + PP_4507 0.60 +0.2
5,121,234 + PP_4507 0.60 -0.1
5,121,235 - PP_4507 0.60 +0.5
5,121,235 - PP_4507 0.60 +0.5
5,121,235 - PP_4507 0.60 +1.5
5,121,327 + PP_4507 0.67 -0.7
5,121,342 - PP_4507 0.68 -0.1
5,121,438 + PP_4507 0.74 -0.4
5,121,438 + PP_4507 0.74 -0.3
5,121,438 + PP_4507 0.74 -0.9
5,121,438 + PP_4507 0.74 +0.5
5,121,438 + PP_4507 0.74 -0.5
5,121,438 + PP_4507 0.74 -0.8
5,121,438 + PP_4507 0.74 +1.5
5,121,438 + PP_4507 0.74 -1.3
5,121,438 + PP_4507 0.74 +1.5
5,121,439 - PP_4507 0.74 -1.6
5,121,439 - PP_4507 0.74 -1.2
5,121,439 - PP_4507 0.74 -0.7
5,121,439 - PP_4507 0.74 -0.3
5,121,439 - PP_4507 0.74 +0.3
5,121,439 - PP_4507 0.74 -0.8
5,121,439 - PP_4507 0.74 -2.1
5,121,439 - PP_4507 0.74 -0.8
5,121,439 - PP_4507 0.74 -1.1
5,121,659 - PP_4507 0.89 +0.2
5,121,845 + -0.7
5,121,920 + PP_4508 0.15 -0.3
5,121,921 - PP_4508 0.15 -0.1
5,121,959 + PP_4508 0.19 -1.5
5,121,960 - PP_4508 0.19 -0.0
5,121,960 - PP_4508 0.19 +0.5
5,121,960 - PP_4508 0.19 +0.6
5,121,960 - PP_4508 0.19 +0.9
5,122,301 + PP_4508 0.54 -0.7
5,122,301 + PP_4508 0.54 -0.3
5,122,301 + PP_4508 0.54 +1.1
5,122,302 - PP_4508 0.54 +0.3
5,122,302 - PP_4508 0.54 +0.1
5,122,302 - PP_4508 0.54 +0.2
5,122,466 + PP_4508 0.71 -0.2
5,122,467 - PP_4508 0.71 +0.1
5,122,524 - PP_4508 0.77 -0.4
5,122,577 + PP_4508 0.82 +0.1

Or see this region's nucleotide sequence