Strain Fitness in Pseudomonas putida KT2440 around PP_4147

Experiment: Adaptation in M9 media timecourse 4; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 3
4,684,220	+		PP_4146	0.47	-0.1
4,684,220	+		PP_4146	0.47	-0.9
4,684,220	+		PP_4146	0.47	+0.3
4,684,220	+		PP_4146	0.47	-0.1
4,684,220	+		PP_4146	0.47	+0.2
4,684,220	+		PP_4146	0.47	+0.0
4,684,220	+		PP_4146	0.47	-0.0
4,684,220	+		PP_4146	0.47	+1.5
4,684,221	-		PP_4146	0.47	-0.2
4,684,221	-		PP_4146	0.47	-1.3
4,684,221	-		PP_4146	0.47	+0.3
4,684,221	-		PP_4146	0.47	-0.1
4,684,222	+		PP_4146	0.47	+1.1
4,684,223	-		PP_4146	0.47	+0.7
4,684,223	-		PP_4146	0.47	-0.5
4,684,460	+		PP_4146	0.60	-0.4
4,684,460	+		PP_4146	0.60	-0.3
4,684,461	-		PP_4146	0.60	+0.3
4,684,461	-		PP_4146	0.60	+0.4
4,684,463	+		PP_4146	0.60	-0.2
4,684,464	-		PP_4146	0.60	-0.4
4,684,568	+		PP_4146	0.66	+0.0
4,684,569	-		PP_4146	0.66	-1.3
4,684,569	-		PP_4146	0.66	+1.2
4,684,598	-				+0.5
4,684,598	-		PP_4146	0.68	+0.7
4,684,717	-		PP_4146	0.74	-0.1
4,684,747	+		PP_4146	0.76	-0.2
4,684,748	+		PP_4146	0.76	-0.8
4,684,748	+		PP_4146	0.76	+0.1
4,684,748	+		PP_4146	0.76	+0.1
4,684,748	+		PP_4146	0.76	+0.0
4,684,748	+		PP_4146	0.76	+0.3
4,684,749	-		PP_4146	0.76	+1.0
4,684,898	+		PP_4146	0.84	-0.0
4,684,898	+		PP_4146	0.84	+0.2
4,684,899	-		PP_4146	0.84	+0.7
4,684,899	-		PP_4146	0.84	-1.4
4,684,940	+		PP_4146	0.86	-0.3
4,684,940	+		PP_4146	0.86	+0.5
4,684,940	+		PP_4146	0.86	-0.4
4,684,940	+		PP_4146	0.86	-0.0
4,684,941	-		PP_4146	0.86	-0.2
4,684,941	-		PP_4146	0.86	+0.1
4,684,941	-		PP_4146	0.86	-0.6
4,684,941	-		PP_4146	0.86	-0.1
4,684,941	-		PP_4146	0.86	+0.6
4,685,057	+				+0.6
4,685,057	+				+1.5
4,685,060	+				+0.9
4,685,061	-				-0.7
4,685,061	-				+1.7
4,685,061	-				-1.0
4,685,061	-				-0.7
4,685,061	-				-0.7
4,685,079	-				+0.5
4,685,138	+				+0.1
4,685,138	+				-0.4
4,685,139	-				-0.4
4,685,155	+				-0.8
4,685,156	-				+0.0
4,685,156	-				+0.5
4,685,333	-				+1.5
4,685,445	+		PP_4147	0.14	-0.5
4,685,446	-		PP_4147	0.14	+2.1
4,685,449	+		PP_4147	0.14	-0.1
4,685,450	-		PP_4147	0.14	-0.5
4,685,450	-		PP_4147	0.14	-1.0
4,685,551	+		PP_4147	0.20	+0.8
4,685,552	-		PP_4147	0.20	+1.0
4,685,842	+		PP_4147	0.36	-0.6
4,685,842	+		PP_4147	0.36	+1.2
4,685,843	-		PP_4147	0.36	+0.4
4,686,017	-		PP_4147	0.45	-0.5
4,686,056	-		PP_4147	0.47	+0.8
4,686,056	-		PP_4147	0.47	+0.3
4,686,205	+		PP_4147	0.55	+0.4
4,686,206	-		PP_4147	0.55	-0.4
4,686,241	+		PP_4147	0.57	+0.5
4,686,241	+		PP_4147	0.57	-0.1
4,686,260	-		PP_4147	0.58	+0.4
4,686,260	-		PP_4147	0.58	-0.1
4,686,353	+		PP_4147	0.63	-0.6
4,686,353	+		PP_4147	0.63	-0.7
4,686,425	-		PP_4147	0.67	+1.1
4,686,425	-		PP_4147	0.67	-0.5
4,686,425	-		PP_4147	0.67	+0.2
4,686,425	-		PP_4147	0.67	-0.2
4,686,610	+		PP_4147	0.77	-0.5
4,686,610	+		PP_4147	0.77	+0.5
4,686,610	+		PP_4147	0.77	+0.2
4,686,611	-		PP_4147	0.78	-0.5
4,686,611	-		PP_4147	0.78	-0.4
4,686,614	+		PP_4147	0.78	-0.2
4,686,615	-		PP_4147	0.78	-0.6
4,686,637	+		PP_4147	0.79	+0.0
4,686,856	+				-0.7
4,686,856	+				+0.8
4,686,856	+				-1.5
4,686,859	+				-0.6
4,686,859	+				+0.7
4,686,859	+				-0.2
4,686,859	+				-0.3
4,686,860	-				+0.2
4,686,901	+				+0.2
4,686,940	+				+0.7
4,686,940	+				-0.3
4,686,941	-				-0.3
4,686,941	-				-0.0
4,686,981	-				+0.5
4,687,021	+				-2.1
4,687,022	-				-0.4
4,687,035	-				-0.4
4,687,274	+		PP_4148	0.23	+0.2
4,687,274	+		PP_4148	0.23	+0.2
4,687,274	+		PP_4148	0.23	-0.8
4,687,275	-		PP_4148	0.23	+0.4
4,687,275	-		PP_4148	0.23	-0.4
4,687,326	-		PP_4148	0.28	-0.0
4,687,326	-				-0.1
4,687,439	+		PP_4148	0.39	-0.3
4,687,439	+		PP_4148	0.39	+0.5
4,687,439	+		PP_4148	0.39	+0.9
4,687,439	+		PP_4148	0.39	+1.3
4,687,439	+		PP_4148	0.39	+0.4
4,687,439	+		PP_4148	0.39	-0.3
4,687,440	-		PP_4148	0.39	-0.4
4,687,440	-		PP_4148	0.39	+2.2
4,687,530	-		PP_4148	0.47	+0.1
4,687,589	+		PP_4148	0.53	+0.1
4,687,667	+		PP_4148	0.60	+0.1
4,687,667	+		PP_4148	0.60	+0.2
4,687,668	-		PP_4148	0.60	-0.1
4,687,668	-		PP_4148	0.60	+0.1
4,687,772	+		PP_4148	0.70	-0.1
4,687,772	+		PP_4148	0.70	-0.2
4,687,773	-		PP_4148	0.70	+0.0
4,687,773	-		PP_4148	0.70	+0.2