Strain Fitness in Pseudomonas putida KT2440 around PP_4055

Experiment: Adaptation in M9 media timecourse 4; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 3
4,572,399	+		PP_4053	0.82	-0.1
4,572,414	+		PP_4053	0.82	+0.5
4,572,415	-		PP_4053	0.82	-0.1
4,572,462	+		PP_4053	0.84	-0.1
4,572,463	-		PP_4053	0.84	+0.4
4,572,609	+				+1.5
4,572,610	-		PP_4053	0.89	-0.6
4,572,610	-		PP_4053	0.89	-0.2
4,572,625	+		PP_4053	0.90	+0.8
4,572,734	+				-0.3
4,572,778	+				-1.2
4,572,779	-				+0.2
4,572,898	+				+0.4
4,572,899	-				-0.5
4,572,899	-				-0.6
4,572,966	-		PP_4054	0.20	+0.5
4,572,989	-		PP_4054	0.28	-0.2
4,573,180	+				+0.4
4,573,181	-				-0.2
4,573,228	+				+0.0
4,573,228	+				+1.3
4,573,228	+				-0.2
4,573,228	+				+0.5
4,573,252	-				-0.3
4,573,252	-				-0.3
4,573,252	-				+1.1
4,573,513	+				-0.1
4,573,514	-				-0.5
4,573,514	-				-0.1
4,573,542	+				-0.2
4,573,542	+				-2.0
4,573,543	-				-2.4
4,573,551	+		PP_4055	0.10	-0.4
4,573,552	-		PP_4055	0.10	-0.8
4,573,581	+		PP_4055	0.12	-1.6
4,573,581	+				-0.1
4,573,581	+		PP_4055	0.12	-1.0
4,573,581	+		PP_4055	0.12	-1.0
4,573,581	+		PP_4055	0.12	-0.7
4,573,581	+		PP_4055	0.12	-0.2
4,573,582	-		PP_4055	0.12	-0.4
4,573,582	-		PP_4055	0.12	-0.6
4,573,596	+		PP_4055	0.12	-1.0
4,573,596	+		PP_4055	0.12	-0.6
4,573,596	+		PP_4055	0.12	-0.4
4,573,597	-		PP_4055	0.12	+0.0
4,573,597	-		PP_4055	0.12	-1.2
4,573,597	-		PP_4055	0.12	-0.2
4,573,597	-				+0.2
4,573,597	-		PP_4055	0.12	-0.3
4,573,605	+		PP_4055	0.13	+0.3
4,573,605	+		PP_4055	0.13	-0.2
4,573,659	+		PP_4055	0.15	-1.3
4,573,660	-		PP_4055	0.15	+0.1
4,573,711	-		PP_4055	0.18	-1.6
4,573,787	+		PP_4055	0.21	-0.7
4,573,854	+		PP_4055	0.24	-1.0
4,573,854	+		PP_4055	0.24	-1.2
4,573,854	+		PP_4055	0.24	+1.5
4,573,855	-		PP_4055	0.24	-2.2
4,573,855	-		PP_4055	0.24	-1.6
4,573,855	-		PP_4055	0.24	+0.9
4,573,855	-		PP_4055	0.24	-0.4
4,574,046	+		PP_4055	0.33	-0.2
4,574,046	+		PP_4055	0.33	-0.1
4,574,046	+		PP_4055	0.33	-0.8
4,574,047	-		PP_4055	0.33	-2.4
4,574,047	-		PP_4055	0.33	-0.8
4,574,055	+		PP_4055	0.34	+0.5
4,574,055	+		PP_4055	0.34	-0.9
4,574,178	+		PP_4055	0.39	+0.2
4,574,248	-		PP_4055	0.43	+0.5
4,574,278	-		PP_4055	0.44	-1.0
4,574,278	-		PP_4055	0.44	-1.6
4,574,280	+		PP_4055	0.44	-1.2
4,574,280	+		PP_4055	0.44	-1.3
4,574,280	+		PP_4055	0.44	-0.2
4,574,280	+		PP_4055	0.44	-3.2
4,574,281	-		PP_4055	0.44	-0.8
4,574,281	-		PP_4055	0.44	-1.0
4,574,362	-		PP_4055	0.48	-0.5
4,574,694	+		PP_4055	0.63	-0.8
4,574,695	-		PP_4055	0.63	-1.4
4,574,754	+		PP_4055	0.66	-1.5
4,574,754	+		PP_4055	0.66	-0.2
4,574,755	-		PP_4055	0.66	-1.8
4,574,755	-		PP_4055	0.66	+0.0
4,574,982	+		PP_4055	0.77	+1.5
4,575,123	+		PP_4055	0.83	-1.5
4,575,124	-		PP_4055	0.83	-0.6
4,575,124	-		PP_4055	0.83	-0.5
4,575,232	+		PP_4055	0.88	-0.9
4,575,232	+		PP_4055	0.88	-0.5
4,575,233	-		PP_4055	0.88	-1.9
4,575,332	-				-2.6
4,575,355	-				-0.2
4,575,422	+				-0.4
4,575,423	-				-0.1
4,575,423	-				+0.2
4,575,423	-				-1.0
4,575,423	-				-1.9
4,575,469	-				-0.2
4,575,506	+				+0.1
4,575,506	+				-0.3
4,575,506	+				+0.0
4,575,507	-				-0.2
4,575,507	-				-0.8
4,575,546	-				-0.4
4,575,624	+				+0.0
4,575,625	-				+0.0
4,575,625	-				+0.8
4,575,625	-				-0.5
4,575,723	+		PP_4056	0.15	-0.4
4,575,757	-		PP_4056	0.19	-0.6
4,575,757	-		PP_4056	0.19	+0.8
4,575,905	-		PP_4056	0.38	+1.5
4,575,943	+				-0.9
4,576,110	+		PP_4056	0.64	+0.4
4,576,295	+		PP_4056	0.87	+0.6
4,576,295	+		PP_4056	0.87	-1.7
4,576,296	-		PP_4056	0.87	+0.8
4,576,296	-		PP_4056	0.87	-0.3
4,576,296	-		PP_4056	0.87	-0.3
4,576,297	+		PP_4056	0.87	-1.0
4,576,297	+		PP_4056	0.87	-0.7
4,576,298	-		PP_4056	0.87	-0.3
4,576,298	-		PP_4056	0.87	-0.0
4,576,412	+				-0.9
4,576,413	-				+1.0