Strain Fitness in Pseudomonas putida KT2440 around PP_3136

Experiment: Adaptation in M9 media timecourse 4; day 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 3
3,550,827	+				-0.5
3,550,827	+				-0.3
3,550,957	+		PP_3135	0.11	+0.5
3,550,958	-		PP_3135	0.11	-0.5
3,551,101	+				-1.1
3,551,102	-		PP_3135	0.26	-0.0
3,551,102	-		PP_3135	0.26	-0.3
3,551,102	-		PP_3135	0.26	+0.2
3,551,102	-		PP_3135	0.26	-0.5
3,551,102	-		PP_3135	0.26	+0.9
3,551,119	-		PP_3135	0.28	+0.0
3,551,164	+		PP_3135	0.33	+0.2
3,551,164	+		PP_3135	0.33	-0.4
3,551,165	-		PP_3135	0.33	-0.1
3,551,165	-		PP_3135	0.33	-0.6
3,551,245	+		PP_3135	0.41	-0.3
3,551,380	+		PP_3135	0.55	-1.3
3,551,381	-		PP_3135	0.56	+0.4
3,551,441	-		PP_3135	0.62	-0.1
3,551,444	-				-0.8
3,551,501	-		PP_3135	0.68	+0.6
3,551,587	+		PP_3135	0.77	+0.0
3,551,612	-		PP_3135	0.80	-0.6
3,551,803	+				+0.2
3,551,803	+				-0.4
3,551,803	+				-0.1
3,551,803	+				-0.7
3,551,803	+				-1.1
3,551,803	+				+0.1
3,551,804	-				-0.4
3,551,804	-				+0.7
3,551,804	-				+0.3
3,551,915	+		PP_3136	0.19	+1.0
3,551,916	-		PP_3136	0.19	-0.3
3,551,958	+		PP_3136	0.27	-0.4
3,551,958	+		PP_3136	0.27	-1.1
3,551,959	-		PP_3136	0.28	-0.4
3,551,959	-		PP_3136	0.28	+0.7
3,552,072	+		PP_3136	0.49	-0.6
3,552,203	+		PP_3136	0.74	+0.3
3,552,253	+		PP_3136	0.84	-0.1
3,552,253	+		PP_3136	0.84	-0.1
3,552,344	-				-0.8
3,552,443	+		PP_3137	0.10	+0.4
3,552,443	+		PP_3137	0.10	+0.4
3,552,443	+		PP_3137	0.10	+0.1
3,552,443	+		PP_3137	0.10	+0.1
3,552,443	+		PP_3137	0.10	-0.8
3,552,444	-		PP_3137	0.10	-0.2
3,552,444	-		PP_3137	0.10	-0.4
3,552,504	+		PP_3137	0.16	+1.0
3,552,505	-		PP_3137	0.16	+1.6
3,552,600	+				+0.7
3,552,600	+		PP_3137	0.26	-0.6
3,552,600	+		PP_3137	0.26	+0.2
3,552,601	-		PP_3137	0.26	-0.2
3,552,976	+		PP_3137	0.65	+0.1
3,553,013	+		PP_3137	0.68	+0.1
3,553,014	-		PP_3137	0.69	+0.3
3,553,014	-		PP_3137	0.69	-0.6
3,553,086	+		PP_3137	0.76	+1.2
3,553,086	+		PP_3137	0.76	+0.1
3,553,086	+		PP_3137	0.76	-0.7
3,553,087	-		PP_3137	0.76	-0.8
3,553,151	+		PP_3137	0.83	+0.6
3,553,152	-		PP_3137	0.83	-0.8
3,553,313	+				+0.2
3,553,314	-				-0.1