Strain Fitness in Pseudomonas putida KT2440 around PP_5600

Experiment: Adaptation in M9 media timecourse 4; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 2
3,767,016	-		PP_3329	0.35	+0.5
3,767,053	-		PP_3329	0.38	-0.5
3,767,207	+		PP_3329	0.50	-0.1
3,767,207	+		PP_3329	0.50	+1.4
3,767,211	+		PP_3329	0.50	+0.3
3,767,211	+		PP_3329	0.50	+0.2
3,767,211	+		PP_3329	0.50	+0.4
3,767,212	-		PP_3329	0.50	-0.8
3,767,212	-		PP_3329	0.50	-1.1
3,767,212	-		PP_3329	0.50	-2.6
3,767,212	-		PP_3329	0.50	-0.2
3,767,212	-		PP_3329	0.50	+0.7
3,767,212	-		PP_3329	0.50	-0.9
3,767,298	+		PP_3329	0.57	-0.2
3,767,298	+		PP_3329	0.57	-0.3
3,767,298	+		PP_3329	0.57	-0.7
3,767,299	-		PP_3329	0.57	+0.1
3,767,299	-		PP_3329	0.57	+0.5
3,767,299	-		PP_3329	0.57	-0.1
3,767,299	-		PP_3329	0.57	+0.2
3,767,299	-		PP_3329	0.57	+0.2
3,767,299	-		PP_3329	0.57	+0.1
3,767,299	-		PP_3329	0.57	-0.2
3,767,308	+		PP_3329	0.57	+0.7
3,767,309	-		PP_3329	0.57	+1.0
3,767,484	+		PP_3329	0.71	+0.1
3,767,485	-		PP_3329	0.71	+0.7
3,767,597	+		PP_3329	0.80	+0.4
3,767,598	-		PP_3329	0.80	+0.1
3,767,598	-		PP_3329	0.80	+0.0
3,767,598	-		PP_3329	0.80	-0.4
3,767,598	-		PP_3329	0.80	+0.4
3,767,598	-		PP_3329	0.80	+0.5
3,767,598	-		PP_3329	0.80	+0.1
3,767,598	-		PP_3329	0.80	-0.7
3,767,797	-				+0.1
3,767,855	+				-0.2
3,767,929	+				+0.4
3,767,929	+				+0.3
3,767,929	+				+0.5
3,767,930	-				-0.6
3,767,930	-				+0.3
3,767,930	-				-0.1
3,768,031	+		PP_5600	0.12	-1.9
3,768,105	+		PP_5600	0.31	-1.3
3,768,287	+		PP_5600	0.77	-0.6
3,768,756	+		PP_3330	0.16	-0.1
3,768,757	-		PP_3330	0.16	-0.0
3,768,858	+		PP_3330	0.20	+0.2
3,768,859	-		PP_3330	0.20	-1.1
3,768,859	-		PP_3330	0.20	-1.4
3,768,996	+		PP_3330	0.27	+1.3
3,768,996	+		PP_3330	0.27	-0.3
3,768,997	-		PP_3330	0.27	-0.6
3,769,077	+		PP_3330	0.30	+0.5
3,769,077	+		PP_3330	0.30	-0.5
3,769,101	+		PP_3330	0.31	-0.6
3,769,102	-		PP_3330	0.31	+0.7
3,769,104	-		PP_3330	0.32	-0.3
3,769,104	-		PP_3330	0.32	+0.1
3,769,194	+		PP_3330	0.36	-0.2
3,769,195	-		PP_3330	0.36	+0.3
3,769,238	-		PP_3330	0.38	-0.3
3,769,256	+		PP_3330	0.39	-0.2
3,769,256	+		PP_3330	0.39	+0.5
3,769,257	-		PP_3330	0.39	-0.2
3,769,294	-		PP_3330	0.40	-0.1
3,769,294	-		PP_3330	0.40	-1.0
3,769,294	-		PP_3330	0.40	-0.3
3,769,314	+		PP_3330	0.41	+0.2
3,769,353	+		PP_3330	0.43	+0.9