Strain Fitness in Pseudomonas putida KT2440 around PP_4281

Experiment: Adaptation in M9 media timecourse 4; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 2
4,870,709	+				+1.0
4,870,710	-				-0.9
4,870,710	-				-0.2
4,870,733	+				+0.1
4,870,733	+				-0.0
4,870,755	+				+0.5
4,870,756	-				+2.4
4,870,756	-				-0.7
4,870,857	-		PP_4280	0.10	-0.4
4,870,935	+		PP_4280	0.20	+0.1
4,870,936	-		PP_4280	0.20	-1.1
4,871,047	+		PP_4280	0.33	+0.6
4,871,047	+		PP_4280	0.33	-0.1
4,871,047	+		PP_4280	0.33	-1.0
4,871,268	+				+0.5
4,871,523	+		PP_4280	0.89	-0.5
4,871,523	+		PP_4280	0.89	+0.1
4,871,523	+		PP_4280	0.89	-0.6
4,871,523	+		PP_4280	0.89	+1.2
4,871,523	+		PP_4280	0.89	+0.5
4,871,523	+		PP_4280	0.89	-0.0
4,871,524	-		PP_4280	0.89	+0.2
4,871,625	+				-0.8
4,871,626	-				-0.7
4,871,626	-				+0.6
4,871,626	-				+0.7
4,871,713	+				-0.1
4,871,713	+				+1.2
4,871,713	+				+0.1
4,871,713	+				+0.9
4,871,713	+				-1.3
4,871,713	+				-0.7
4,871,713	+				+0.6
4,871,714	-				-1.4
4,871,714	-				+0.3
4,871,714	-				+0.4
4,871,717	-				+0.0
4,871,717	-				-0.0
4,871,893	+		PP_4281	0.20	-0.1
4,871,922	+		PP_4281	0.23	-0.2
4,871,922	+		PP_4281	0.23	-0.1
4,871,922	+		PP_4281	0.23	-0.5
4,871,922	+		PP_4281	0.23	-0.1
4,871,922	+		PP_4281	0.23	+0.3
4,871,923	-		PP_4281	0.23	-1.4
4,871,923	-		PP_4281	0.23	-0.4
4,871,926	+		PP_4281	0.23	-0.0
4,871,926	+		PP_4281	0.23	+1.0
4,871,926	+		PP_4281	0.23	-0.2
4,871,926	+		PP_4281	0.23	+0.4
4,871,926	+		PP_4281	0.23	-0.6
4,871,927	-		PP_4281	0.23	+0.1
4,871,927	-		PP_4281	0.23	-1.4
4,871,927	-		PP_4281	0.23	+0.1
4,871,927	-		PP_4281	0.23	-0.4
4,871,927	-		PP_4281	0.23	-0.9
4,872,116	+		PP_4281	0.38	-0.8
4,872,116	+		PP_4281	0.38	-0.5
4,872,117	-		PP_4281	0.38	-0.8
4,872,117	-		PP_4281	0.38	-0.2
4,872,169	+		PP_4281	0.42	-0.7
4,872,223	+				+0.4
4,872,310	+		PP_4281	0.52	-1.6
4,872,310	+		PP_4281	0.52	-0.4
4,872,310	+		PP_4281	0.52	+0.2
4,872,310	+		PP_4281	0.52	-0.6
4,872,311	-		PP_4281	0.52	-0.9
4,872,311	-		PP_4281	0.52	-0.9
4,872,311	-		PP_4281	0.52	+1.0
4,872,311	-		PP_4281	0.52	+0.0
4,872,385	+		PP_4281	0.58	-0.5
4,872,397	+		PP_4281	0.59	-0.4
4,872,397	+		PP_4281	0.59	+0.4
4,872,398	-		PP_4281	0.59	+0.1
4,872,446	+		PP_4281	0.63	-0.8
4,872,446	+		PP_4281	0.63	-0.1
4,872,446	+		PP_4281	0.63	-0.6
4,872,447	-		PP_4281	0.63	-0.6
4,872,447	-		PP_4281	0.63	-1.5
4,872,623	+		PP_4281	0.76	+0.0
4,872,623	+		PP_4281	0.76	-0.7
4,872,623	+		PP_4281	0.76	-2.0
4,872,623	+		PP_4281	0.76	-0.0
4,872,624	-		PP_4281	0.76	-0.5
4,872,643	+		PP_4281	0.78	-1.2
4,872,643	+		PP_4281	0.78	-0.0
4,872,643	+		PP_4281	0.78	-0.2
4,872,643	+		PP_4281	0.78	-0.1
4,872,643	+		PP_4281	0.78	+1.0
4,872,644	-		PP_4281	0.78	-0.7
4,872,644	-		PP_4281	0.78	-0.0
4,872,682	+		PP_4281	0.81	-0.4
4,872,790	+		PP_4281	0.89	-0.2
4,872,791	-		PP_4281	0.89	-0.5
4,872,791	-		PP_4281	0.89	+1.4
4,872,814	+				-0.4
4,872,815	-				-0.7
4,872,815	-				+1.4
4,872,887	+				+0.3
4,872,888	-				-0.2
4,872,888	-				+1.2
4,872,888	-				+0.7
4,872,888	-				-0.1
4,872,888	-				-1.0
4,872,928	+				+0.2
4,872,929	-				-1.9
4,872,953	-				-0.2
4,873,073	+		PP_4282	0.21	+0.3
4,873,074	-		PP_4282	0.21	-0.0
4,873,074	-		PP_4282	0.21	-0.8
4,873,233	-		PP_4282	0.44	-0.2
4,873,234	+		PP_4282	0.44	-0.1
4,873,319	-		PP_4282	0.57	-0.6
4,873,366	+		PP_4282	0.63	-0.3
4,873,367	-		PP_4282	0.63	-1.0
4,873,431	+		PP_4282	0.73	+0.2
4,873,431	+		PP_4282	0.73	-0.9
4,873,542	+		PP_4282	0.89	-0.5
4,873,543	-		PP_4282	0.89	-0.5
4,873,607	+				+0.1