Strain Fitness in Pseudomonas putida KT2440 around PP_4201

Experiment: Adaptation in M9 media timecourse 4; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 2
4,745,159	-				+1.4
4,745,186	+				+1.0
4,745,187	-				+0.3
4,745,187	-				+0.5
4,745,325	+		PP_4200	0.17	-0.1
4,745,326	-		PP_4200	0.17	-0.2
4,745,326	-		PP_4200	0.17	+0.3
4,745,354	+		PP_4200	0.21	+0.2
4,745,354	+		PP_4200	0.21	+0.4
4,745,354	+		PP_4200	0.21	+0.2
4,745,354	+		PP_4200	0.21	+0.4
4,745,389	+		PP_4200	0.25	-0.5
4,745,389	+		PP_4200	0.25	-0.9
4,745,389	+		PP_4200	0.25	+0.2
4,745,389	+		PP_4200	0.25	-0.3
4,745,389	+		PP_4200	0.25	+0.1
4,745,390	-		PP_4200	0.25	-0.2
4,745,390	-		PP_4200	0.25	-1.2
4,745,456	+		PP_4200	0.33	+1.4
4,745,456	+		PP_4200	0.33	+1.1
4,745,456	+		PP_4200	0.33	-1.7
4,745,456	+		PP_4200	0.33	+0.9
4,745,456	+		PP_4200	0.33	-3.1
4,745,457	-		PP_4200	0.33	+0.1
4,745,457	-		PP_4200	0.33	+0.8
4,745,457	-		PP_4200	0.33	-0.0
4,745,545	-		PP_4200	0.44	-0.5
4,745,588	+		PP_4200	0.49	+0.2
4,745,588	+		PP_4200	0.49	-0.3
4,745,651	+		PP_4200	0.57	+1.2
4,745,651	+		PP_4200	0.57	-0.8
4,745,651	+		PP_4200	0.57	-0.2
4,745,681	+		PP_4200	0.60	+0.3
4,745,681	+		PP_4200	0.60	+0.6
4,745,682	-		PP_4200	0.60	+0.2
4,746,025	+				+1.4
4,746,026	-				+0.8
4,746,063	+				-1.9
4,746,063	+				-0.5
4,746,063	+				-0.9
4,746,063	+				-0.1
4,746,063	+				+1.6
4,746,064	-				-0.3
4,746,064	-				-0.2
4,746,065	+				+0.5
4,747,788	-				+0.2
4,747,788	-				-0.2
4,747,828	-				+0.4
4,747,949	-				+0.3
4,747,995	-				-0.7
4,747,995	-				-0.6
4,748,003	-				+0.2
4,748,003	-				-1.3