Strain Fitness in Pseudomonas putida KT2440 around PP_4199

Experiment: Adaptation in M9 media timecourse 4; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 2
4,743,822	+				-0.6
4,743,822	+		PP_4197	0.89	+0.7
4,743,864	+				+0.1
4,743,864	+				-0.2
4,743,865	-				-0.2
4,743,929	-				-0.7
4,743,929	-				+0.4
4,743,938	+				+1.1
4,743,938	+				+0.1
4,743,938	+				+1.1
4,743,939	-				+0.4
4,743,939	-				+0.8
4,743,968	-				+0.1
4,744,006	-				-0.3
4,744,006	-				+0.3
4,744,053	-				-0.0
4,744,053	-				+2.4
4,744,053	-				-0.2
4,744,234	+		PP_4198	0.27	-0.9
4,744,234	+		PP_4198	0.27	+0.1
4,744,235	-		PP_4198	0.27	-0.9
4,744,244	-		PP_4198	0.28	+0.6
4,744,244	-		PP_4198	0.28	+0.4
4,744,245	+		PP_4198	0.29	+1.0
4,744,255	+		PP_4198	0.30	-0.4
4,744,256	-		PP_4198	0.30	+2.4
4,744,256	-		PP_4198	0.30	+1.4
4,744,563	+		PP_4198	0.68	+0.5
4,744,578	+		PP_4198	0.69	+2.4
4,744,578	+		PP_4198	0.69	+0.8
4,744,578	+		PP_4198	0.69	+1.4
4,744,584	+		PP_4198	0.70	-0.6
4,744,584	+		PP_4198	0.70	-0.6
4,744,584	+		PP_4198	0.70	-0.2
4,744,584	+		PP_4198	0.70	+0.1
4,744,585	-		PP_4198	0.70	-0.7
4,744,585	-		PP_4198	0.70	+0.8
4,744,981	-		PP_4199	0.45	-2.5
4,745,159	-				+1.4
4,745,186	+				+1.0
4,745,187	-				+0.3
4,745,187	-				+0.5
4,745,325	+		PP_4200	0.17	-0.1
4,745,326	-		PP_4200	0.17	-0.2
4,745,326	-		PP_4200	0.17	+0.3
4,745,354	+		PP_4200	0.21	+0.2
4,745,354	+		PP_4200	0.21	+0.4
4,745,354	+		PP_4200	0.21	+0.2
4,745,354	+		PP_4200	0.21	+0.4
4,745,389	+		PP_4200	0.25	-0.5
4,745,389	+		PP_4200	0.25	-0.9
4,745,389	+		PP_4200	0.25	+0.2
4,745,389	+		PP_4200	0.25	-0.3
4,745,389	+		PP_4200	0.25	+0.1
4,745,390	-		PP_4200	0.25	-0.2
4,745,390	-		PP_4200	0.25	-1.2
4,745,456	+		PP_4200	0.33	+1.4
4,745,456	+		PP_4200	0.33	+1.1
4,745,456	+		PP_4200	0.33	-1.7
4,745,456	+		PP_4200	0.33	+0.9
4,745,456	+		PP_4200	0.33	-3.1
4,745,457	-		PP_4200	0.33	+0.1
4,745,457	-		PP_4200	0.33	+0.8
4,745,457	-		PP_4200	0.33	-0.0
4,745,545	-		PP_4200	0.44	-0.5
4,745,588	+		PP_4200	0.49	+0.2
4,745,588	+		PP_4200	0.49	-0.3
4,745,651	+		PP_4200	0.57	+1.2
4,745,651	+		PP_4200	0.57	-0.8
4,745,651	+		PP_4200	0.57	-0.2
4,745,681	+		PP_4200	0.60	+0.3
4,745,681	+		PP_4200	0.60	+0.6
4,745,682	-		PP_4200	0.60	+0.2
4,746,025	+				+1.4
4,746,026	-				+0.8
4,746,063	+				-1.9
4,746,063	+				-0.5
4,746,063	+				-0.9
4,746,063	+				-0.1
4,746,063	+				+1.6
4,746,064	-				-0.3
4,746,064	-				-0.2
4,746,065	+				+0.5