Strain Fitness in Pseudomonas putida KT2440 around PP_4064

Experiment: Adaptation in M9 media timecourse 4; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 4; day 2
4,587,144	+		PP_4063	0.60	+1.4
4,587,144	+		PP_4063	0.60	-1.4
4,587,144	+		PP_4063	0.60	+0.2
4,587,144	+		PP_4063	0.60	-0.2
4,587,145	-		PP_4063	0.60	-0.0
4,587,145	-		PP_4063	0.60	+0.9
4,587,145	-		PP_4063	0.60	-0.8
4,587,192	+		PP_4063	0.63	+0.6
4,587,421	-		PP_4063	0.77	-0.2
4,587,483	+		PP_4063	0.80	+0.2
4,587,484	-		PP_4063	0.80	-0.4
4,587,484	-		PP_4063	0.80	-0.1
4,587,645	-		PP_4063	0.90	+0.7
4,587,645	-		PP_4063	0.90	-0.7
4,587,796	+				-0.2
4,587,797	-				-0.1
4,587,798	+				-0.1
4,587,798	+				-0.3
4,587,798	+				+0.5
4,587,799	-				-0.5
4,587,864	+				+0.5
4,587,864	+				-0.1
4,587,865	-				+0.2
4,588,023	+				+1.4
4,588,024	-				+0.7
4,588,024	-				+0.3
4,588,046	+				+0.1
4,588,095	+				-0.6
4,588,095	+				-0.2
4,588,095	+				+0.2
4,588,095	+				-0.3
4,588,096	-				-0.8
4,588,096	-				-0.2
4,588,326	-		PP_4064	0.16	+0.0
4,588,326	-		PP_4064	0.16	-1.6
4,588,347	-		PP_4064	0.18	-1.0
4,588,410	-		PP_4064	0.24	-0.0
4,588,592	+		PP_4064	0.39	+0.4
4,588,593	-		PP_4064	0.39	-1.1
4,588,593	-		PP_4064	0.39	-0.2
4,588,593	-		PP_4064	0.39	-0.3
4,588,646	+		PP_4064	0.44	-0.4
4,588,646	+		PP_4064	0.44	+0.8
4,588,646	+		PP_4064	0.44	-0.9
4,588,647	-		PP_4064	0.44	+0.8
4,588,647	-		PP_4064	0.44	-1.0
4,588,647	-		PP_4064	0.44	-0.3
4,588,647	-		PP_4064	0.44	-0.4
4,588,855	+		PP_4064	0.62	+0.0
4,588,856	-		PP_4064	0.62	-0.1
4,588,856	-		PP_4064	0.62	-0.9
4,588,871	+		PP_4064	0.63	+0.4
4,588,872	-		PP_4064	0.63	+1.4
4,588,872	-		PP_4064	0.63	-0.1
4,588,940	+		PP_4064	0.69	+0.6
4,588,940	+		PP_4064	0.69	-0.5
4,588,941	-		PP_4064	0.69	-0.6
4,588,941	-		PP_4064	0.69	-0.1
4,588,941	-		PP_4064	0.69	-1.5
4,588,941	-		PP_4064	0.69	+0.2
4,588,941	-		PP_4064	0.69	-0.0
4,589,015	+		PP_4064	0.76	-1.2
4,589,015	+		PP_4064	0.76	-1.8
4,589,015	+		PP_4064	0.76	-0.1
4,589,015	+		PP_4064	0.76	-0.6
4,589,015	+		PP_4064	0.76	-0.3
4,589,016	-				+0.4
4,589,016	-		PP_4064	0.76	+0.3
4,589,042	+		PP_4064	0.78	+0.2
4,589,048	+		PP_4064	0.78	+1.4
4,589,048	+		PP_4064	0.78	-1.0
4,589,049	-		PP_4064	0.78	+0.0
4,589,049	-		PP_4064	0.78	+0.5
4,589,177	+		PP_4064	0.89	+0.6
4,589,177	+		PP_4064	0.89	-0.8
4,589,177	+		PP_4064	0.89	-1.0
4,589,179	+		PP_4064	0.90	+0.1
4,589,179	+		PP_4064	0.90	-0.1
4,589,179	+		PP_4064	0.90	+0.6
4,589,180	-		PP_4064	0.90	+0.9
4,589,180	-		PP_4064	0.90	-0.1
4,589,180	-		PP_4064	0.90	-0.7
4,589,225	+				+0.7
4,589,303	+				-0.6
4,589,304	-				-0.6
4,589,324	+				-0.5
4,589,325	-				-0.5
4,589,325	-				-0.6
4,589,562	+		PP_4065	0.15	-0.4
4,589,563	-		PP_4065	0.15	-0.8
4,589,653	+		PP_4065	0.21	-0.8
4,589,654	-		PP_4065	0.21	+0.5
4,589,667	+		PP_4065	0.22	-0.7
4,589,667	+				-1.2
4,589,667	+		PP_4065	0.22	-0.0
4,589,668	-		PP_4065	0.22	-0.7
4,589,668	-		PP_4065	0.22	-0.1
4,589,668	-		PP_4065	0.22	-0.9
4,589,668	-		PP_4065	0.22	-1.8
4,589,739	+		PP_4065	0.26	+0.4
4,589,898	+		PP_4065	0.36	-0.2
4,589,898	+		PP_4065	0.36	-0.2
4,589,899	-		PP_4065	0.36	-0.0
4,589,899	-		PP_4065	0.36	-0.5
4,589,899	-		PP_4065	0.36	-0.7
4,590,061	-		PP_4065	0.46	+0.3
4,590,061	-		PP_4065	0.46	-0.0
4,590,169	-		PP_4065	0.53	+0.0
4,590,187	-		PP_4065	0.54	+0.5