Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6023 and Atu6024 are separated by 119 nucleotides Atu6024 and Atu6025 are separated by 114 nucleotides Atu6025 and Atu6026 are separated by 1 nucleotides
Atu6023: Atu6023 - N-methylhydantoinase B/acetone carboxylase, alpha subunit, at 33,744 to 35,699
Atu6023
Atu6024: Atu6024 - transcriptional regulator, LysR family, at 35,819 to 36,739
Atu6024
Atu6025: Atu6025 - ABC transporter, membrane spanning protein (nopaline), at 36,854 to 37,579
Atu6025
Atu6026: Atu6026 - ABC transporter, membrane spanning protein (nopaline), at 37,581 to 38,291
Atu6026
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 34.838 kb on - strand, within Atu6023 at 34.876 kb on - strand, within Atu6023 at 34.882 kb on - strand, within Atu6023 at 34.884 kb on + strand, within Atu6023 at 34.884 kb on + strand, within Atu6023 at 34.884 kb on + strand, within Atu6023 at 34.884 kb on + strand, within Atu6023 at 34.892 kb on - strand, within Atu6023 at 34.892 kb on - strand, within Atu6023 at 34.960 kb on + strand, within Atu6023 at 34.965 kb on + strand, within Atu6023 at 34.968 kb on - strand, within Atu6023 at 34.968 kb on - strand, within Atu6023 at 34.983 kb on - strand, within Atu6023 at 34.983 kb on - strand, within Atu6023 at 35.046 kb on + strand, within Atu6023 at 35.054 kb on - strand, within Atu6023 at 35.181 kb on - strand, within Atu6023 at 35.204 kb on - strand, within Atu6023 at 35.209 kb on - strand, within Atu6023 at 35.213 kb on + strand, within Atu6023 at 35.221 kb on - strand, within Atu6023 at 35.259 kb on + strand, within Atu6023 at 35.276 kb on + strand, within Atu6023 at 35.284 kb on - strand, within Atu6023 at 35.325 kb on - strand, within Atu6023 at 35.409 kb on + strand, within Atu6023 at 35.457 kb on - strand, within Atu6023 at 35.531 kb on - strand at 35.536 kb on - strand at 35.546 kb on - strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.575 kb on + strand at 35.583 kb on - strand at 35.583 kb on - strand at 35.583 kb on - strand at 35.583 kb on - strand at 35.583 kb on - strand at 35.583 kb on - strand at 35.598 kb on - strand at 35.724 kb on + strand at 35.725 kb on + strand at 35.733 kb on - strand at 35.742 kb on - strand at 35.783 kb on + strand at 35.874 kb on + strand at 35.934 kb on + strand, within Atu6024 at 35.992 kb on - strand, within Atu6024 at 36.029 kb on + strand, within Atu6024 at 36.029 kb on + strand, within Atu6024 at 36.029 kb on + strand, within Atu6024 at 36.037 kb on - strand, within Atu6024 at 36.037 kb on - strand, within Atu6024 at 36.037 kb on - strand, within Atu6024 at 36.039 kb on + strand, within Atu6024 at 36.042 kb on - strand, within Atu6024 at 36.055 kb on + strand, within Atu6024 at 36.063 kb on - strand, within Atu6024 at 36.236 kb on + strand, within Atu6024 at 36.251 kb on + strand, within Atu6024 at 36.258 kb on + strand, within Atu6024 at 36.307 kb on + strand, within Atu6024 at 36.355 kb on + strand, within Atu6024 at 36.355 kb on + strand, within Atu6024 at 36.355 kb on + strand, within Atu6024 at 36.363 kb on - strand, within Atu6024 at 36.363 kb on - strand, within Atu6024 at 36.386 kb on + strand, within Atu6024 at 36.400 kb on - strand, within Atu6024 at 36.453 kb on - strand, within Atu6024 at 36.559 kb on + strand, within Atu6024 at 36.559 kb on + strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.562 kb on - strand, within Atu6024 at 36.571 kb on + strand, within Atu6024 at 36.579 kb on + strand, within Atu6024 at 36.579 kb on - strand, within Atu6024 at 36.579 kb on - strand, within Atu6024 at 36.581 kb on + strand, within Atu6024 at 36.581 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.597 kb on + strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.605 kb on - strand, within Atu6024 at 36.639 kb on + strand, within Atu6024 at 36.712 kb on - strand at 36.747 kb on + strand at 36.747 kb on + strand at 36.790 kb on - strand at 36.800 kb on + strand at 36.851 kb on + strand at 36.864 kb on + strand at 36.872 kb on + strand at 36.880 kb on - strand at 36.957 kb on + strand, within Atu6025 at 36.984 kb on + strand, within Atu6025 at 37.003 kb on + strand, within Atu6025 at 37.003 kb on + strand, within Atu6025 at 37.003 kb on + strand, within Atu6025 at 37.011 kb on - strand, within Atu6025 at 37.011 kb on - strand, within Atu6025 at 37.015 kb on - strand, within Atu6025 at 37.017 kb on + strand, within Atu6025 at 37.071 kb on + strand, within Atu6025 at 37.093 kb on + strand, within Atu6025 at 37.114 kb on - strand, within Atu6025 at 37.169 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.247 kb on + strand, within Atu6025 at 37.255 kb on + strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.255 kb on - strand, within Atu6025 at 37.284 kb on + strand, within Atu6025 at 37.284 kb on + strand, within Atu6025 at 37.289 kb on + strand, within Atu6025 at 37.297 kb on - strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.338 kb on + strand, within Atu6025 at 37.343 kb on + strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.346 kb on - strand, within Atu6025 at 37.348 kb on + strand, within Atu6025 at 37.351 kb on - strand, within Atu6025 at 37.356 kb on - strand, within Atu6025 at 37.373 kb on + strand, within Atu6025 at 37.390 kb on + strand, within Atu6025 at 37.404 kb on + strand, within Atu6025 at 37.452 kb on + strand, within Atu6025 at 37.488 kb on - strand, within Atu6025 at 37.522 kb on - strand at 37.533 kb on + strand at 37.538 kb on + strand at 37.590 kb on + strand at 37.595 kb on - strand at 37.695 kb on - strand, within Atu6026
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 34,838 - Atu6023 0.56 +0.8 34,876 - Atu6023 0.58 +2.7 34,882 - Atu6023 0.58 -0.7 34,884 + Atu6023 0.58 -0.6 34,884 + Atu6023 0.58 -2.6 34,884 + Atu6023 0.58 -1.2 34,884 + Atu6023 0.58 -0.3 34,892 - Atu6023 0.59 +0.7 34,892 - Atu6023 0.59 -0.5 34,960 + Atu6023 0.62 +0.5 34,965 + Atu6023 0.62 +1.2 34,968 - Atu6023 0.63 -1.6 34,968 - Atu6023 0.63 -0.7 34,983 - Atu6023 0.63 -0.4 34,983 - Atu6023 0.63 -1.9 35,046 + Atu6023 0.67 +1.6 35,054 - Atu6023 0.67 +0.3 35,181 - Atu6023 0.73 +0.5 35,204 - Atu6023 0.75 -0.0 35,209 - Atu6023 0.75 -0.1 35,213 + Atu6023 0.75 +0.9 35,221 - Atu6023 0.76 -1.6 35,259 + Atu6023 0.77 -0.7 35,276 + Atu6023 0.78 -0.7 35,284 - Atu6023 0.79 -0.3 35,325 - Atu6023 0.81 -0.5 35,409 + Atu6023 0.85 +0.5 35,457 - Atu6023 0.88 -1.7 35,531 - -1.0 35,536 - +0.4 35,546 - -0.9 35,575 + -0.1 35,575 + +0.4 35,575 + +0.4 35,575 + -0.2 35,575 + +0.1 35,575 + -0.2 35,575 + +0.1 35,575 + +0.7 35,583 - -0.1 35,583 - -0.2 35,583 - -0.1 35,583 - -0.4 35,583 - -1.1 35,583 - -0.4 35,598 - -0.7 35,724 + -0.1 35,725 + -0.6 35,733 - +0.5 35,742 - -2.3 35,783 + +0.5 35,874 + -0.0 35,934 + Atu6024 0.12 -0.3 35,992 - Atu6024 0.19 +0.9 36,029 + Atu6024 0.23 -0.9 36,029 + Atu6024 0.23 +4.3 36,029 + Atu6024 0.23 -1.2 36,037 - Atu6024 0.24 -0.2 36,037 - Atu6024 0.24 -1.5 36,037 - Atu6024 0.24 +0.5 36,039 + Atu6024 0.24 +0.7 36,042 - Atu6024 0.24 +1.1 36,055 + Atu6024 0.26 -0.3 36,063 - Atu6024 0.26 -0.0 36,236 + Atu6024 0.45 +0.7 36,251 + Atu6024 0.47 -1.3 36,258 + Atu6024 0.48 +0.4 36,307 + Atu6024 0.53 +0.8 36,355 + Atu6024 0.58 -1.3 36,355 + Atu6024 0.58 +1.3 36,355 + Atu6024 0.58 +0.3 36,363 - Atu6024 0.59 +0.1 36,363 - Atu6024 0.59 -0.4 36,386 + Atu6024 0.62 -0.7 36,400 - Atu6024 0.63 +6.4 36,453 - Atu6024 0.69 -2.0 36,559 + Atu6024 0.80 -0.1 36,559 + Atu6024 0.80 -0.3 36,562 - Atu6024 0.81 -0.3 36,562 - Atu6024 0.81 -0.6 36,562 - Atu6024 0.81 -0.9 36,562 - Atu6024 0.81 +0.6 36,571 + Atu6024 0.82 -1.1 36,579 + Atu6024 0.83 -0.6 36,579 - Atu6024 0.83 -0.1 36,579 - Atu6024 0.83 -0.9 36,581 + Atu6024 0.83 -0.2 36,581 + Atu6024 0.83 -0.1 36,597 + Atu6024 0.84 +1.6 36,597 + Atu6024 0.84 +0.3 36,597 + Atu6024 0.84 +0.3 36,597 + Atu6024 0.84 +0.5 36,605 - Atu6024 0.85 -0.8 36,605 - Atu6024 0.85 -0.4 36,605 - Atu6024 0.85 +0.8 36,605 - Atu6024 0.85 -0.5 36,639 + Atu6024 0.89 +0.8 36,712 - +0.5 36,747 + +0.7 36,747 + +0.4 36,790 - +0.3 36,800 + +1.5 36,851 + -0.3 36,864 + +3.8 36,872 + +0.9 36,880 - +3.4 36,957 + Atu6025 0.14 -0.5 36,984 + Atu6025 0.18 +0.7 37,003 + Atu6025 0.21 -1.2 37,003 + Atu6025 0.21 -2.5 37,003 + Atu6025 0.21 -0.9 37,011 - Atu6025 0.22 +0.6 37,011 - Atu6025 0.22 +1.4 37,015 - Atu6025 0.22 -0.1 37,017 + Atu6025 0.22 +0.7 37,071 + Atu6025 0.30 +0.1 37,093 + Atu6025 0.33 +0.0 37,114 - Atu6025 0.36 +0.7 37,169 + Atu6025 0.43 +0.6 37,247 + Atu6025 0.54 -1.8 37,247 + Atu6025 0.54 +0.9 37,247 + Atu6025 0.54 +0.7 37,247 + Atu6025 0.54 -1.1 37,247 + Atu6025 0.54 -0.3 37,255 + Atu6025 0.55 -0.5 37,255 - Atu6025 0.55 +1.4 37,255 - Atu6025 0.55 -0.3 37,255 - Atu6025 0.55 -0.3 37,255 - Atu6025 0.55 +0.6 37,284 + Atu6025 0.59 +4.2 37,284 + Atu6025 0.59 -0.3 37,289 + Atu6025 0.60 +1.0 37,297 - Atu6025 0.61 -0.1 37,338 + Atu6025 0.67 -0.0 37,338 + Atu6025 0.67 +0.0 37,338 + Atu6025 0.67 -1.1 37,338 + Atu6025 0.67 -0.5 37,338 + Atu6025 0.67 -1.6 37,338 + Atu6025 0.67 -0.6 37,338 + Atu6025 0.67 -1.9 37,338 + Atu6025 0.67 +0.1 37,338 + Atu6025 0.67 -0.9 37,343 + Atu6025 0.67 -3.0 37,346 - Atu6025 0.68 -1.6 37,346 - Atu6025 0.68 +0.3 37,346 - Atu6025 0.68 -2.6 37,346 - Atu6025 0.68 -0.1 37,346 - Atu6025 0.68 -0.3 37,346 - Atu6025 0.68 -0.1 37,346 - Atu6025 0.68 +0.1 37,346 - Atu6025 0.68 +0.2 37,346 - Atu6025 0.68 -0.3 37,346 - Atu6025 0.68 +0.5 37,346 - Atu6025 0.68 +0.2 37,346 - Atu6025 0.68 +0.0 37,346 - Atu6025 0.68 -1.3 37,346 - Atu6025 0.68 -0.6 37,346 - Atu6025 0.68 -0.4 37,348 + Atu6025 0.68 +0.3 37,351 - Atu6025 0.68 -0.3 37,356 - Atu6025 0.69 -1.1 37,373 + Atu6025 0.71 +0.5 37,390 + Atu6025 0.74 -1.1 37,404 + Atu6025 0.76 -2.0 37,452 + Atu6025 0.82 -0.3 37,488 - Atu6025 0.87 +0.7 37,522 - -0.0 37,533 + -1.7 37,538 + +0.6 37,590 + +2.9 37,595 - +0.6 37,695 - Atu6026 0.16 -3.1
Or see this region's nucleotide sequence