Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3435 and Atu3436 overlap by 4 nucleotides Atu3436 and Atu3437 overlap by 23 nucleotides Atu3437 and Atu3438 are separated by 18 nucleotides
Atu3435: Atu3435 - oligopeptide ABC transporter permease, at 481,741 to 482,736
Atu3435
Atu3436: Atu3436 - oligopeptide ABC transporter ATPase, at 482,733 to 483,731
Atu3436
Atu3437: Atu3437 - oligopeptide ABC transporter ATPase, at 483,709 to 484,644
Atu3437
Atu3438: Atu3438 - oxidoreductase, at 484,663 to 485,718
Atu3438
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 482.797 kb on - strand at 482.836 kb on + strand, within Atu3436 at 482.880 kb on - strand, within Atu3436 at 482.917 kb on + strand, within Atu3436 at 482.925 kb on - strand, within Atu3436 at 483.061 kb on - strand, within Atu3436 at 483.209 kb on - strand, within Atu3436 at 483.291 kb on - strand, within Atu3436 at 483.397 kb on - strand, within Atu3436 at 483.453 kb on - strand, within Atu3436 at 483.454 kb on - strand, within Atu3436 at 483.512 kb on + strand, within Atu3436 at 483.520 kb on - strand, within Atu3436 at 483.562 kb on + strand, within Atu3436 at 483.598 kb on + strand, within Atu3436 at 483.606 kb on - strand, within Atu3436 at 483.643 kb on + strand at 483.719 kb on + strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.910 kb on - strand, within Atu3437 at 483.919 kb on - strand, within Atu3437 at 483.942 kb on + strand, within Atu3437 at 484.009 kb on - strand, within Atu3437 at 484.060 kb on - strand, within Atu3437 at 484.104 kb on + strand, within Atu3437 at 484.130 kb on + strand, within Atu3437 at 484.182 kb on - strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.325 kb on + strand, within Atu3437 at 484.400 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.415 kb on - strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.600 kb on + strand at 484.793 kb on + strand, within Atu3438 at 484.800 kb on - strand, within Atu3438 at 484.848 kb on - strand, within Atu3438 at 484.868 kb on - strand, within Atu3438 at 484.921 kb on + strand, within Atu3438 at 484.956 kb on + strand, within Atu3438 at 485.125 kb on - strand, within Atu3438 at 485.160 kb on + strand, within Atu3438 at 485.240 kb on - strand, within Atu3438 at 485.276 kb on - strand, within Atu3438 at 485.276 kb on - strand, within Atu3438 at 485.293 kb on + strand, within Atu3438 at 485.301 kb on - strand, within Atu3438 at 485.428 kb on + strand, within Atu3438 at 485.470 kb on + strand, within Atu3438 at 485.633 kb on + strand at 485.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 482,797 - +0.3 482,836 + Atu3436 0.10 -0.3 482,880 - Atu3436 0.15 +0.3 482,917 + Atu3436 0.18 -1.8 482,925 - Atu3436 0.19 -0.5 483,061 - Atu3436 0.33 -2.1 483,209 - Atu3436 0.48 +0.7 483,291 - Atu3436 0.56 -0.2 483,397 - Atu3436 0.66 +0.7 483,453 - Atu3436 0.72 -0.3 483,454 - Atu3436 0.72 +0.0 483,512 + Atu3436 0.78 -0.0 483,520 - Atu3436 0.79 +0.2 483,562 + Atu3436 0.83 +0.5 483,598 + Atu3436 0.87 +0.2 483,606 - Atu3436 0.87 -1.0 483,643 + -0.5 483,719 + -0.6 483,802 - +0.3 483,802 - +0.4 483,802 - +0.4 483,802 - +0.2 483,802 - +0.2 483,910 - Atu3437 0.21 +0.4 483,919 - Atu3437 0.22 -2.5 483,942 + Atu3437 0.25 +0.1 484,009 - Atu3437 0.32 +0.2 484,060 - Atu3437 0.38 +0.2 484,104 + Atu3437 0.42 +0.4 484,130 + Atu3437 0.45 -2.0 484,182 - Atu3437 0.51 -1.1 484,319 + Atu3437 0.65 +2.5 484,319 + Atu3437 0.65 +0.2 484,325 + Atu3437 0.66 +0.2 484,400 + Atu3437 0.74 +2.7 484,407 + Atu3437 0.75 +0.1 484,407 + Atu3437 0.75 -1.4 484,407 + Atu3437 0.75 +0.1 484,415 - Atu3437 0.75 +1.5 484,428 + Atu3437 0.77 -1.0 484,428 + Atu3437 0.77 +0.1 484,428 + Atu3437 0.77 +0.5 484,436 - Atu3437 0.78 -0.3 484,436 - Atu3437 0.78 +0.3 484,436 - Atu3437 0.78 -1.8 484,437 - Atu3437 0.78 -0.6 484,437 - Atu3437 0.78 -1.2 484,600 + -0.4 484,793 + Atu3438 0.12 +0.5 484,800 - Atu3438 0.13 +3.8 484,848 - Atu3438 0.18 -1.8 484,868 - Atu3438 0.19 -0.6 484,921 + Atu3438 0.24 +0.0 484,956 + Atu3438 0.28 -0.8 485,125 - Atu3438 0.44 +0.4 485,160 + Atu3438 0.47 +0.0 485,240 - Atu3438 0.55 +0.3 485,276 - Atu3438 0.58 -0.2 485,276 - Atu3438 0.58 +4.6 485,293 + Atu3438 0.60 +0.8 485,301 - Atu3438 0.60 +1.0 485,428 + Atu3438 0.72 -0.0 485,470 + Atu3438 0.76 +0.1 485,633 + +0.1 485,640 - -0.6
Or see this region's nucleotide sequence