Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3364 and Atu3365 are separated by 15 nucleotides Atu3365 and Atu8094 are separated by 42 nucleotides Atu8094 and Atu3366 are separated by 394 nucleotides
Atu3364: Atu3364 - D-amino acid dehydrogenase, at 403,471 to 404,724
Atu3364
Atu3365: Atu3365 - hypothetical protein, at 404,740 to 405,300
Atu3365
Atu8094: Atu8094 - hypothetical protein, at 405,343 to 405,588
Atu8094
Atu3366: Atu3366 - tripartite ATP-independent periplasmic transporter DctQ, at 405,983 to 406,522
Atu3366
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.749 kb on + strand, within Atu3364 at 403.767 kb on + strand, within Atu3364 at 403.849 kb on + strand, within Atu3364 at 403.860 kb on + strand, within Atu3364 at 403.867 kb on - strand, within Atu3364 at 403.905 kb on + strand, within Atu3364 at 403.911 kb on - strand, within Atu3364 at 403.923 kb on + strand, within Atu3364 at 403.931 kb on - strand, within Atu3364 at 404.068 kb on - strand, within Atu3364 at 404.133 kb on + strand, within Atu3364 at 404.149 kb on - strand, within Atu3364 at 404.306 kb on + strand, within Atu3364 at 404.314 kb on - strand, within Atu3364 at 404.379 kb on - strand, within Atu3364 at 404.426 kb on + strand, within Atu3364 at 404.566 kb on + strand, within Atu3364 at 404.659 kb on + strand at 404.659 kb on + strand at 404.676 kb on + strand at 404.799 kb on - strand, within Atu3365 at 404.839 kb on + strand, within Atu3365 at 404.868 kb on + strand, within Atu3365 at 405.060 kb on + strand, within Atu3365 at 405.128 kb on - strand, within Atu3365 at 405.155 kb on + strand, within Atu3365 at 405.163 kb on - strand, within Atu3365 at 405.163 kb on - strand, within Atu3365 at 405.254 kb on + strand at 405.276 kb on - strand at 405.344 kb on - strand at 405.454 kb on + strand, within Atu8094 at 405.464 kb on + strand, within Atu8094 at 405.523 kb on - strand, within Atu8094 at 405.523 kb on - strand, within Atu8094 at 405.541 kb on + strand, within Atu8094 at 405.652 kb on - strand at 405.655 kb on + strand at 405.696 kb on - strand at 405.701 kb on + strand at 405.730 kb on - strand at 405.747 kb on + strand at 405.894 kb on + strand at 405.902 kb on - strand at 405.981 kb on - strand at 406.036 kb on + strand at 406.063 kb on + strand, within Atu3366 at 406.071 kb on - strand, within Atu3366 at 406.257 kb on + strand, within Atu3366
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 403,749 + Atu3364 0.22 +0.0 403,767 + Atu3364 0.24 +0.6 403,849 + Atu3364 0.30 +0.6 403,860 + Atu3364 0.31 -0.6 403,867 - Atu3364 0.32 -0.1 403,905 + Atu3364 0.35 +1.4 403,911 - Atu3364 0.35 +0.2 403,923 + Atu3364 0.36 +0.7 403,931 - Atu3364 0.37 +0.6 404,068 - Atu3364 0.48 +1.6 404,133 + Atu3364 0.53 -0.5 404,149 - Atu3364 0.54 +0.3 404,306 + Atu3364 0.67 +0.3 404,314 - Atu3364 0.67 -1.1 404,379 - Atu3364 0.72 +1.8 404,426 + Atu3364 0.76 -0.8 404,566 + Atu3364 0.87 -0.1 404,659 + -0.2 404,659 + +1.9 404,676 + +0.3 404,799 - Atu3365 0.11 +0.6 404,839 + Atu3365 0.18 -0.3 404,868 + Atu3365 0.23 -2.5 405,060 + Atu3365 0.57 +0.1 405,128 - Atu3365 0.69 -0.1 405,155 + Atu3365 0.74 -0.9 405,163 - Atu3365 0.75 -1.6 405,163 - Atu3365 0.75 -0.3 405,254 + -0.6 405,276 - -2.7 405,344 - +0.5 405,454 + Atu8094 0.45 +0.6 405,464 + Atu8094 0.49 -0.1 405,523 - Atu8094 0.73 +1.5 405,523 - Atu8094 0.73 -0.2 405,541 + Atu8094 0.80 +1.2 405,652 - -0.1 405,655 + +0.0 405,696 - -1.2 405,701 + +1.0 405,730 - +0.7 405,747 + +0.4 405,894 + -0.2 405,902 - -0.7 405,981 - -0.1 406,036 + -0.1 406,063 + Atu3366 0.15 -1.1 406,071 - Atu3366 0.16 +0.5 406,257 + Atu3366 0.51 -0.5
Or see this region's nucleotide sequence