Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3321 and Atu3322 are separated by 620 nucleotides Atu3322 and Atu3323 are separated by 8 nucleotides
Atu3321: Atu3321 - hypothetical protein, at 352,131 to 354,152
Atu3321
Atu3322: Atu3322 - ABC transporter permease, at 354,773 to 356,428
Atu3322
Atu3323: Atu3323 - HlyD family secretion protein, at 356,437 to 357,795
Atu3323
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 353.881 kb on - strand, within Atu3321 at 353.913 kb on + strand, within Atu3321 at 353.913 kb on - strand, within Atu3321 at 354.080 kb on + strand at 354.090 kb on + strand at 354.098 kb on - strand at 354.147 kb on + strand at 354.169 kb on + strand at 354.170 kb on + strand at 354.178 kb on - strand at 354.200 kb on - strand at 354.363 kb on + strand at 354.371 kb on - strand at 354.430 kb on + strand at 354.546 kb on - strand at 354.748 kb on + strand at 354.857 kb on + strand at 354.989 kb on + strand, within Atu3322 at 355.055 kb on - strand, within Atu3322 at 355.068 kb on + strand, within Atu3322 at 355.153 kb on + strand, within Atu3322 at 355.192 kb on + strand, within Atu3322 at 355.262 kb on + strand, within Atu3322 at 355.336 kb on + strand, within Atu3322 at 355.360 kb on - strand, within Atu3322 at 355.414 kb on - strand, within Atu3322 at 355.614 kb on + strand, within Atu3322 at 355.826 kb on - strand, within Atu3322 at 355.850 kb on + strand, within Atu3322 at 355.899 kb on + strand, within Atu3322 at 355.940 kb on + strand, within Atu3322 at 355.969 kb on + strand, within Atu3322 at 356.082 kb on - strand, within Atu3322 at 356.118 kb on - strand, within Atu3322 at 356.129 kb on - strand, within Atu3322 at 356.163 kb on - strand, within Atu3322 at 356.194 kb on + strand, within Atu3322 at 356.196 kb on - strand, within Atu3322 at 356.227 kb on + strand, within Atu3322 at 356.227 kb on + strand, within Atu3322 at 356.358 kb on + strand at 356.423 kb on + strand at 356.424 kb on - strand at 356.448 kb on + strand at 356.486 kb on - strand at 356.498 kb on + strand at 356.501 kb on - strand at 356.501 kb on - strand at 356.513 kb on + strand at 356.545 kb on - strand at 356.545 kb on - strand at 356.580 kb on + strand, within Atu3323 at 356.614 kb on + strand, within Atu3323 at 356.651 kb on - strand, within Atu3323 at 356.822 kb on + strand, within Atu3323 at 356.833 kb on + strand, within Atu3323 at 356.976 kb on + strand, within Atu3323 at 357.106 kb on + strand, within Atu3323 at 357.155 kb on - strand, within Atu3323 at 357.322 kb on + strand, within Atu3323 at 357.374 kb on + strand, within Atu3323 at 357.380 kb on + strand, within Atu3323
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 353,881 - Atu3321 0.87 +0.2 353,913 + Atu3321 0.88 -0.8 353,913 - Atu3321 0.88 +0.3 354,080 + -0.1 354,090 + +2.2 354,098 - -1.1 354,147 + -1.2 354,169 + -0.6 354,170 + -0.8 354,178 - -0.5 354,200 - -0.7 354,363 + -0.2 354,371 - -1.0 354,430 + -0.0 354,546 - +2.5 354,748 + -2.0 354,857 + +0.3 354,989 + Atu3322 0.13 +0.7 355,055 - Atu3322 0.17 +0.6 355,068 + Atu3322 0.18 -2.2 355,153 + Atu3322 0.23 -0.7 355,192 + Atu3322 0.25 +0.3 355,262 + Atu3322 0.30 +0.5 355,336 + Atu3322 0.34 -0.9 355,360 - Atu3322 0.35 -0.5 355,414 - Atu3322 0.39 +1.8 355,614 + Atu3322 0.51 -0.6 355,826 - Atu3322 0.64 -0.1 355,850 + Atu3322 0.65 -0.4 355,899 + Atu3322 0.68 -0.5 355,940 + Atu3322 0.70 +4.5 355,969 + Atu3322 0.72 +0.8 356,082 - Atu3322 0.79 +0.5 356,118 - Atu3322 0.81 +0.7 356,129 - Atu3322 0.82 -0.4 356,163 - Atu3322 0.84 +0.3 356,194 + Atu3322 0.86 +1.1 356,196 - Atu3322 0.86 +1.2 356,227 + Atu3322 0.88 -0.0 356,227 + Atu3322 0.88 -1.2 356,358 + -2.0 356,423 + +0.7 356,424 - +0.0 356,448 + -1.3 356,486 - -2.1 356,498 + -0.3 356,501 - -0.1 356,501 - +1.3 356,513 + -2.5 356,545 - +0.7 356,545 - +0.0 356,580 + Atu3323 0.11 -1.4 356,614 + Atu3323 0.13 -1.3 356,651 - Atu3323 0.16 +0.3 356,822 + Atu3323 0.28 -1.4 356,833 + Atu3323 0.29 +1.0 356,976 + Atu3323 0.40 -1.1 357,106 + Atu3323 0.49 -0.3 357,155 - Atu3323 0.53 -0.6 357,322 + Atu3323 0.65 -0.7 357,374 + Atu3323 0.69 +1.1 357,380 + Atu3323 0.69 -0.9
Or see this region's nucleotide sequence