Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3316 and Atu3317 are separated by 394 nucleotides Atu3317 and Atu3318 are separated by 59 nucleotides Atu3318 and Atu3319 are separated by 270 nucleotides Atu3319 and Atu3320 are separated by 385 nucleotides
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Atu3317: Atu3317 - hypothetical protein, at 348,935 to 349,285
Atu3317
Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115
Atu3318
Atu3319: Atu3319 - hypothetical protein, at 350,386 to 350,631
Atu3319
Atu3320: Atu3320 - fibrinogen binding protein, at 351,017 to 351,982
Atu3320
Position (kb) 349
350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 348.499 kb on - strand at 348.550 kb on - strand at 348.869 kb on + strand at 348.877 kb on - strand at 348.891 kb on - strand at 348.921 kb on - strand at 349.034 kb on + strand, within Atu3317 at 349.074 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.207 kb on + strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.457 kb on - strand, within Atu3318 at 349.462 kb on - strand, within Atu3318 at 349.496 kb on + strand, within Atu3318 at 349.531 kb on + strand, within Atu3318 at 349.539 kb on - strand, within Atu3318 at 349.666 kb on + strand, within Atu3318 at 349.882 kb on + strand, within Atu3318 at 349.882 kb on - strand, within Atu3318 at 349.882 kb on - strand, within Atu3318 at 349.904 kb on + strand, within Atu3318 at 349.912 kb on - strand, within Atu3318 at 349.927 kb on + strand, within Atu3318 at 349.937 kb on + strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.969 kb on - strand, within Atu3318 at 350.113 kb on - strand at 350.124 kb on + strand at 350.124 kb on + strand at 350.144 kb on + strand at 350.351 kb on - strand at 350.435 kb on + strand, within Atu3319 at 350.456 kb on + strand, within Atu3319 at 350.499 kb on + strand, within Atu3319 at 350.507 kb on - strand, within Atu3319 at 350.576 kb on - strand, within Atu3319 at 350.634 kb on - strand at 350.716 kb on + strand at 350.791 kb on + strand at 350.829 kb on - strand at 350.844 kb on + strand at 350.844 kb on - strand at 350.852 kb on - strand at 350.852 kb on - strand at 350.871 kb on + strand at 350.879 kb on - strand at 350.879 kb on - strand at 350.937 kb on - strand at 350.937 kb on - strand at 350.942 kb on - strand at 351.027 kb on - strand at 351.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 348,499 - -0.4 348,550 - -0.6 348,869 + +0.1 348,877 - -1.3 348,891 - +0.8 348,921 - +0.2 349,034 + Atu3317 0.28 -0.4 349,074 - Atu3317 0.40 -1.6 349,134 - Atu3317 0.57 -0.2 349,134 - Atu3317 0.57 -1.3 349,207 + Atu3317 0.77 -0.2 349,234 - Atu3317 0.85 -0.0 349,234 - Atu3317 0.85 -0.9 349,457 - Atu3318 0.15 -1.7 349,462 - Atu3318 0.15 -0.9 349,496 + Atu3318 0.20 -0.0 349,531 + Atu3318 0.24 -0.4 349,539 - Atu3318 0.25 +0.5 349,666 + Atu3318 0.42 -0.9 349,882 + Atu3318 0.70 -0.0 349,882 - Atu3318 0.70 +0.8 349,882 - Atu3318 0.70 -0.5 349,904 + Atu3318 0.73 +1.7 349,912 - Atu3318 0.74 +0.3 349,927 + Atu3318 0.75 +0.3 349,937 + Atu3318 0.77 -0.6 349,964 - Atu3318 0.80 -0.1 349,964 - Atu3318 0.80 -0.0 349,964 - Atu3318 0.80 -1.3 349,964 - Atu3318 0.80 -0.9 349,969 - Atu3318 0.81 +0.0 350,113 - -1.5 350,124 + -1.1 350,124 + +2.1 350,144 + -0.4 350,351 - +0.1 350,435 + Atu3319 0.20 +1.0 350,456 + Atu3319 0.28 -0.5 350,499 + Atu3319 0.46 +0.2 350,507 - Atu3319 0.49 -0.6 350,576 - Atu3319 0.77 -1.0 350,634 - +0.6 350,716 + -1.3 350,791 + -2.0 350,829 - +1.1 350,844 + -0.5 350,844 - +1.6 350,852 - +0.3 350,852 - -0.1 350,871 + -0.4 350,879 - -3.3 350,879 - -0.5 350,937 - +0.5 350,937 - -0.3 350,942 - -0.1 351,027 - -0.8 351,110 + -0.2
Or see this region's nucleotide sequence