Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3316 and Atu3317 are separated by 394 nucleotides Atu3317 and Atu3318 are separated by 59 nucleotides
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Atu3317: Atu3317 - hypothetical protein, at 348,935 to 349,285
Atu3317
Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115
Atu3318
Position (kb) 348
349
350 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 347.949 kb on + strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 348.001 kb on - strand, within Atu3316 at 348.144 kb on + strand, within Atu3316 at 348.152 kb on - strand, within Atu3316 at 348.213 kb on - strand, within Atu3316 at 348.238 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.499 kb on - strand at 348.550 kb on - strand at 348.869 kb on + strand at 348.877 kb on - strand at 348.891 kb on - strand at 348.921 kb on - strand at 349.034 kb on + strand, within Atu3317 at 349.074 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.134 kb on - strand, within Atu3317 at 349.207 kb on + strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.234 kb on - strand, within Atu3317 at 349.457 kb on - strand, within Atu3318 at 349.462 kb on - strand, within Atu3318 at 349.496 kb on + strand, within Atu3318 at 349.531 kb on + strand, within Atu3318 at 349.539 kb on - strand, within Atu3318 at 349.666 kb on + strand, within Atu3318 at 349.882 kb on + strand, within Atu3318 at 349.882 kb on - strand, within Atu3318 at 349.882 kb on - strand, within Atu3318 at 349.904 kb on + strand, within Atu3318 at 349.912 kb on - strand, within Atu3318 at 349.927 kb on + strand, within Atu3318 at 349.937 kb on + strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.964 kb on - strand, within Atu3318 at 349.969 kb on - strand, within Atu3318 at 350.113 kb on - strand at 350.124 kb on + strand at 350.124 kb on + strand at 350.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 347,949 + Atu3316 0.42 -0.4 347,949 + Atu3316 0.42 +0.8 347,957 - Atu3316 0.43 -0.1 347,957 - Atu3316 0.43 -0.6 348,001 - Atu3316 0.47 -0.9 348,144 + Atu3316 0.61 -0.7 348,152 - Atu3316 0.62 +0.2 348,213 - Atu3316 0.68 +4.5 348,238 + Atu3316 0.70 +0.3 348,289 + Atu3316 0.75 +3.0 348,289 + Atu3316 0.75 +0.2 348,499 - -0.4 348,550 - -0.6 348,869 + +0.1 348,877 - -1.3 348,891 - +0.8 348,921 - +0.2 349,034 + Atu3317 0.28 -0.4 349,074 - Atu3317 0.40 -1.6 349,134 - Atu3317 0.57 -0.2 349,134 - Atu3317 0.57 -1.3 349,207 + Atu3317 0.77 -0.2 349,234 - Atu3317 0.85 -0.0 349,234 - Atu3317 0.85 -0.9 349,457 - Atu3318 0.15 -1.7 349,462 - Atu3318 0.15 -0.9 349,496 + Atu3318 0.20 -0.0 349,531 + Atu3318 0.24 -0.4 349,539 - Atu3318 0.25 +0.5 349,666 + Atu3318 0.42 -0.9 349,882 + Atu3318 0.70 -0.0 349,882 - Atu3318 0.70 +0.8 349,882 - Atu3318 0.70 -0.5 349,904 + Atu3318 0.73 +1.7 349,912 - Atu3318 0.74 +0.3 349,927 + Atu3318 0.75 +0.3 349,937 + Atu3318 0.77 -0.6 349,964 - Atu3318 0.80 -0.1 349,964 - Atu3318 0.80 -0.0 349,964 - Atu3318 0.80 -1.3 349,964 - Atu3318 0.80 -0.9 349,969 - Atu3318 0.81 +0.0 350,113 - -1.5 350,124 + -1.1 350,124 + +2.1 350,144 + -0.4
Or see this region's nucleotide sequence