Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3181 and Atu3182 are separated by 78 nucleotides Atu3182 and Atu3183 are separated by 97 nucleotides Atu3183 and Atu3184 overlap by 4 nucleotides
Atu3181: Atu3181 - hypothetical protein, at 191,044 to 192,246
Atu3181
Atu3182: Atu3182 - hypothetical protein, at 192,325 to 192,762
Atu3182
Atu3183: Atu3183 - hypothetical protein, at 192,860 to 193,129
Atu3183
Atu3184: Atu3184 - hypothetical protein, at 193,126 to 194,169
Atu3184
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 191.912 kb on - strand, within Atu3181 at 191.935 kb on - strand, within Atu3181 at 191.958 kb on - strand, within Atu3181 at 192.000 kb on + strand, within Atu3181 at 192.007 kb on + strand, within Atu3181 at 192.015 kb on - strand, within Atu3181 at 192.065 kb on + strand, within Atu3181 at 192.178 kb on - strand at 192.178 kb on - strand at 192.235 kb on - strand at 192.235 kb on - strand at 192.265 kb on + strand at 192.284 kb on + strand at 192.365 kb on + strand at 192.372 kb on - strand, within Atu3182 at 192.466 kb on + strand, within Atu3182 at 192.466 kb on + strand, within Atu3182 at 192.500 kb on + strand, within Atu3182 at 192.541 kb on + strand, within Atu3182 at 192.743 kb on + strand at 193.005 kb on + strand, within Atu3183 at 193.124 kb on + strand at 193.124 kb on + strand at 193.163 kb on + strand at 193.215 kb on - strand at 193.220 kb on - strand at 193.299 kb on - strand, within Atu3184 at 193.299 kb on - strand, within Atu3184 at 193.428 kb on + strand, within Atu3184 at 193.443 kb on - strand, within Atu3184 at 193.552 kb on - strand, within Atu3184 at 193.675 kb on + strand, within Atu3184 at 193.699 kb on + strand, within Atu3184 at 193.781 kb on + strand, within Atu3184 at 193.805 kb on + strand, within Atu3184 at 193.823 kb on - strand, within Atu3184 at 193.918 kb on - strand, within Atu3184 at 193.920 kb on + strand, within Atu3184 at 193.920 kb on + strand, within Atu3184 at 194.032 kb on - strand, within Atu3184
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 191,912 - Atu3181 0.72 -0.5 191,935 - Atu3181 0.74 -0.2 191,958 - Atu3181 0.76 +0.2 192,000 + Atu3181 0.79 +0.2 192,007 + Atu3181 0.80 -2.2 192,015 - Atu3181 0.81 -1.0 192,065 + Atu3181 0.85 +0.7 192,178 - -0.3 192,178 - -0.4 192,235 - +0.0 192,235 - +0.8 192,265 + -1.2 192,284 + +1.2 192,365 + +0.2 192,372 - Atu3182 0.11 +1.2 192,466 + Atu3182 0.32 +0.4 192,466 + Atu3182 0.32 -1.4 192,500 + Atu3182 0.40 -0.1 192,541 + Atu3182 0.49 -2.6 192,743 + +0.4 193,005 + Atu3183 0.54 -2.4 193,124 + -0.2 193,124 + -0.2 193,163 + +0.5 193,215 - -0.1 193,220 - +4.3 193,299 - Atu3184 0.17 +0.5 193,299 - Atu3184 0.17 +0.0 193,428 + Atu3184 0.29 -2.9 193,443 - Atu3184 0.30 +0.4 193,552 - Atu3184 0.41 +0.5 193,675 + Atu3184 0.53 -0.6 193,699 + Atu3184 0.55 +0.3 193,781 + Atu3184 0.63 -0.1 193,805 + Atu3184 0.65 -1.2 193,823 - Atu3184 0.67 -0.0 193,918 - Atu3184 0.76 -0.8 193,920 + Atu3184 0.76 +1.2 193,920 + Atu3184 0.76 -0.5 194,032 - Atu3184 0.87 +0.4
Or see this region's nucleotide sequence