Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0524 and Atu0525 overlap by 1 nucleotides Atu0525 and Atu0526 are separated by 148 nucleotides Atu0526 and Atu0527 are separated by 54 nucleotides
Atu0524: Atu0524 - transcriptional regulator, LuxR family, at 514,221 to 514,901
Atu0524
Atu0525: Atu0525 - transcriptional regulator, LuxR family, at 514,901 to 515,656
Atu0525
Atu0526: Atu0526 - methyl-accepting chemotaxis protein, at 515,805 to 517,652
Atu0526
Atu0527: Atu0527 - two component sensor kinase/response regulator hybrid, at 517,707 to 521,216
Atu0527
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 514.886 kb on + strand at 514.919 kb on - strand at 514.944 kb on - strand at 515.258 kb on + strand, within Atu0525 at 515.317 kb on + strand, within Atu0525 at 515.443 kb on + strand, within Atu0525 at 515.527 kb on + strand, within Atu0525 at 515.546 kb on - strand, within Atu0525 at 515.547 kb on + strand, within Atu0525 at 515.569 kb on - strand, within Atu0525 at 515.649 kb on - strand at 515.666 kb on + strand at 515.666 kb on + strand at 515.674 kb on - strand at 515.674 kb on - strand at 515.679 kb on + strand at 515.687 kb on - strand at 515.819 kb on + strand at 515.827 kb on - strand at 515.840 kb on + strand at 515.963 kb on + strand at 515.968 kb on + strand at 515.971 kb on - strand at 516.024 kb on + strand, within Atu0526 at 516.033 kb on + strand, within Atu0526 at 516.034 kb on + strand, within Atu0526 at 516.042 kb on - strand, within Atu0526 at 516.042 kb on - strand, within Atu0526 at 516.201 kb on - strand, within Atu0526 at 516.292 kb on + strand, within Atu0526 at 516.374 kb on + strand, within Atu0526 at 516.382 kb on - strand, within Atu0526 at 516.382 kb on - strand, within Atu0526 at 516.631 kb on - strand, within Atu0526 at 516.717 kb on - strand, within Atu0526 at 516.720 kb on + strand, within Atu0526 at 516.742 kb on + strand, within Atu0526 at 516.767 kb on - strand, within Atu0526 at 516.832 kb on + strand, within Atu0526 at 516.882 kb on + strand, within Atu0526 at 516.983 kb on - strand, within Atu0526 at 517.025 kb on + strand, within Atu0526 at 517.093 kb on - strand, within Atu0526 at 517.140 kb on - strand, within Atu0526 at 517.144 kb on + strand, within Atu0526 at 517.183 kb on - strand, within Atu0526 at 517.267 kb on + strand, within Atu0526 at 517.342 kb on - strand, within Atu0526 at 517.419 kb on + strand, within Atu0526 at 517.426 kb on - strand, within Atu0526 at 517.437 kb on - strand, within Atu0526 at 517.451 kb on + strand, within Atu0526 at 517.451 kb on + strand, within Atu0526 at 517.451 kb on - strand, within Atu0526 at 517.466 kb on - strand, within Atu0526 at 517.480 kb on + strand at 517.488 kb on - strand at 517.488 kb on - strand at 517.521 kb on - strand at 517.613 kb on - strand at 517.613 kb on - strand at 517.631 kb on - strand at 518.130 kb on - strand, within Atu0527 at 518.216 kb on + strand, within Atu0527 at 518.219 kb on - strand, within Atu0527 at 518.284 kb on + strand, within Atu0527 at 518.373 kb on + strand, within Atu0527 at 518.462 kb on - strand, within Atu0527 at 518.613 kb on + strand, within Atu0527 at 518.621 kb on - strand, within Atu0527 at 518.640 kb on + strand, within Atu0527
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 514,886 + +1.1 514,919 - +0.1 514,944 - +1.5 515,258 + Atu0525 0.47 +0.7 515,317 + Atu0525 0.55 -0.3 515,443 + Atu0525 0.72 +0.8 515,527 + Atu0525 0.83 -0.2 515,546 - Atu0525 0.85 +2.5 515,547 + Atu0525 0.85 +0.8 515,569 - Atu0525 0.88 -1.2 515,649 - -1.1 515,666 + +0.8 515,666 + +0.4 515,674 - -1.1 515,674 - +1.0 515,679 + +0.6 515,687 - -0.0 515,819 + +0.1 515,827 - -1.3 515,840 + -1.9 515,963 + +0.6 515,968 + +0.8 515,971 - -0.1 516,024 + Atu0526 0.12 -0.2 516,033 + Atu0526 0.12 +0.2 516,034 + Atu0526 0.12 +2.1 516,042 - Atu0526 0.13 +0.6 516,042 - Atu0526 0.13 +0.4 516,201 - Atu0526 0.21 +0.6 516,292 + Atu0526 0.26 +0.3 516,374 + Atu0526 0.31 +1.3 516,382 - Atu0526 0.31 -0.6 516,382 - Atu0526 0.31 -1.3 516,631 - Atu0526 0.45 +1.2 516,717 - Atu0526 0.49 -0.5 516,720 + Atu0526 0.50 +0.4 516,742 + Atu0526 0.51 -0.6 516,767 - Atu0526 0.52 +0.4 516,832 + Atu0526 0.56 +0.2 516,882 + Atu0526 0.58 -0.0 516,983 - Atu0526 0.64 -1.6 517,025 + Atu0526 0.66 +0.8 517,093 - Atu0526 0.70 +0.4 517,140 - Atu0526 0.72 +0.5 517,144 + Atu0526 0.72 -0.1 517,183 - Atu0526 0.75 +0.1 517,267 + Atu0526 0.79 +0.2 517,342 - Atu0526 0.83 +0.2 517,419 + Atu0526 0.87 +0.7 517,426 - Atu0526 0.88 -1.0 517,437 - Atu0526 0.88 -1.1 517,451 + Atu0526 0.89 +0.0 517,451 + Atu0526 0.89 +0.3 517,451 - Atu0526 0.89 -0.8 517,466 - Atu0526 0.90 +1.5 517,480 + -0.2 517,488 - +3.1 517,488 - -0.1 517,521 - -0.3 517,613 - +0.4 517,613 - -1.3 517,631 - -0.0 518,130 - Atu0527 0.12 +0.3 518,216 + Atu0527 0.15 +0.2 518,219 - Atu0527 0.15 -0.1 518,284 + Atu0527 0.16 +0.3 518,373 + Atu0527 0.19 +1.1 518,462 - Atu0527 0.22 -3.3 518,613 + Atu0527 0.26 -0.9 518,621 - Atu0527 0.26 -0.3 518,640 + Atu0527 0.27 +0.5
Or see this region's nucleotide sequence