Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0312 and Atu0313 are separated by 140 nucleotides Atu0313 and Atu0314 are separated by 77 nucleotides Atu0314 and Atu0315 are separated by 89 nucleotides
Atu0312: Atu0312 - cysteine synthase, at 305,093 to 306,061
Atu0312
Atu0313: Atu0313 - RhtB family transporter, at 306,202 to 306,819
Atu0313
Atu0314: Atu0314 - deoxyuridine 5, at 306,897 to 307,367
Atu0314
Atu0315: Atu0315 - peptide chain release factor 3, at 307,457 to 309,040
Atu0315
Position (kb) 306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 305.223 kb on + strand, within Atu0312 at 305.247 kb on + strand, within Atu0312 at 305.247 kb on + strand, within Atu0312 at 305.247 kb on + strand, within Atu0312 at 305.247 kb on + strand, within Atu0312 at 305.247 kb on + strand, within Atu0312 at 305.255 kb on - strand, within Atu0312 at 305.255 kb on - strand, within Atu0312 at 305.255 kb on - strand, within Atu0312 at 305.265 kb on - strand, within Atu0312 at 305.335 kb on - strand, within Atu0312 at 305.341 kb on + strand, within Atu0312 at 305.349 kb on - strand, within Atu0312 at 305.360 kb on + strand, within Atu0312 at 305.368 kb on - strand, within Atu0312 at 305.443 kb on - strand, within Atu0312 at 305.510 kb on + strand, within Atu0312 at 305.510 kb on + strand, within Atu0312 at 305.564 kb on - strand, within Atu0312 at 305.610 kb on + strand, within Atu0312 at 305.630 kb on - strand, within Atu0312 at 305.689 kb on + strand, within Atu0312 at 305.694 kb on + strand, within Atu0312 at 305.697 kb on - strand, within Atu0312 at 305.847 kb on + strand, within Atu0312 at 305.847 kb on + strand, within Atu0312 at 305.847 kb on + strand, within Atu0312 at 305.847 kb on + strand, within Atu0312 at 305.855 kb on - strand, within Atu0312 at 305.855 kb on - strand, within Atu0312 at 305.855 kb on - strand, within Atu0312 at 305.914 kb on + strand, within Atu0312 at 306.063 kb on + strand at 306.071 kb on - strand at 306.073 kb on - strand at 306.109 kb on + strand at 306.126 kb on - strand at 306.255 kb on - strand at 306.268 kb on - strand, within Atu0313 at 306.286 kb on - strand, within Atu0313 at 306.358 kb on + strand, within Atu0313 at 306.361 kb on - strand, within Atu0313 at 306.380 kb on - strand, within Atu0313 at 306.432 kb on + strand, within Atu0313 at 306.553 kb on - strand, within Atu0313 at 306.571 kb on - strand, within Atu0313 at 306.581 kb on - strand, within Atu0313 at 306.609 kb on - strand, within Atu0313 at 306.620 kb on - strand, within Atu0313 at 306.620 kb on - strand, within Atu0313 at 306.634 kb on + strand, within Atu0313 at 306.678 kb on + strand, within Atu0313 at 306.686 kb on - strand, within Atu0313 at 306.724 kb on - strand, within Atu0313 at 306.786 kb on - strand at 306.786 kb on - strand at 306.786 kb on - strand at 306.796 kb on + strand at 306.796 kb on + strand at 306.796 kb on + strand at 306.804 kb on - strand at 306.804 kb on - strand at 306.804 kb on - strand at 306.874 kb on - strand at 306.904 kb on - strand at 307.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 305,223 + Atu0312 0.13 -0.4 305,247 + Atu0312 0.16 -0.9 305,247 + Atu0312 0.16 +0.3 305,247 + Atu0312 0.16 -0.2 305,247 + Atu0312 0.16 -1.0 305,247 + Atu0312 0.16 +0.4 305,255 - Atu0312 0.17 -2.5 305,255 - Atu0312 0.17 +0.2 305,255 - Atu0312 0.17 -2.7 305,265 - Atu0312 0.18 +0.4 305,335 - Atu0312 0.25 -0.3 305,341 + Atu0312 0.26 -0.5 305,349 - Atu0312 0.26 -0.2 305,360 + Atu0312 0.28 +0.6 305,368 - Atu0312 0.28 +1.0 305,443 - Atu0312 0.36 +0.5 305,510 + Atu0312 0.43 -0.1 305,510 + Atu0312 0.43 +0.0 305,564 - Atu0312 0.49 -2.0 305,610 + Atu0312 0.53 -1.1 305,630 - Atu0312 0.55 -0.7 305,689 + Atu0312 0.62 -0.1 305,694 + Atu0312 0.62 +0.4 305,697 - Atu0312 0.62 +0.2 305,847 + Atu0312 0.78 -1.1 305,847 + Atu0312 0.78 -0.4 305,847 + Atu0312 0.78 +1.6 305,847 + Atu0312 0.78 -2.4 305,855 - Atu0312 0.79 -1.3 305,855 - Atu0312 0.79 -0.7 305,855 - Atu0312 0.79 -1.0 305,914 + Atu0312 0.85 +0.3 306,063 + -0.0 306,071 - -0.4 306,073 - +1.1 306,109 + -0.2 306,126 - +0.2 306,255 - +0.0 306,268 - Atu0313 0.11 -1.5 306,286 - Atu0313 0.14 -0.6 306,358 + Atu0313 0.25 -2.7 306,361 - Atu0313 0.26 -0.3 306,380 - Atu0313 0.29 +1.3 306,432 + Atu0313 0.37 +1.1 306,553 - Atu0313 0.57 +1.2 306,571 - Atu0313 0.60 +1.4 306,581 - Atu0313 0.61 -1.6 306,609 - Atu0313 0.66 -1.4 306,620 - Atu0313 0.68 +0.3 306,620 - Atu0313 0.68 +0.6 306,634 + Atu0313 0.70 -0.3 306,678 + Atu0313 0.77 +0.2 306,686 - Atu0313 0.78 -2.8 306,724 - Atu0313 0.84 +0.3 306,786 - -0.9 306,786 - -0.3 306,786 - +0.4 306,796 + -1.5 306,796 + -1.7 306,796 + -1.9 306,804 - -1.6 306,804 - -0.4 306,804 - -0.2 306,874 - +0.2 306,904 - +0.1 307,371 - -1.1
Or see this region's nucleotide sequence