Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0211 and Atu0212 are separated by 95 nucleotides Atu0212 and Atu0213 are separated by 191 nucleotides Atu0213 and Atu0214 are separated by 58 nucleotides
Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467
Atu0211
Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922
Atu0212
Atu0213: Atu0213 - nicotinate phosphoribosyltransferase, at 217,114 to 218,418
Atu0213
Atu0214: Atu0214 - leucine aminopeptidase, at 218,477 to 219,871
Atu0214
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 216.157 kb on - strand, within Atu0211 at 216.236 kb on - strand, within Atu0211 at 216.497 kb on - strand at 216.515 kb on + strand at 216.533 kb on - strand at 216.533 kb on - strand at 216.608 kb on + strand, within Atu0212 at 216.718 kb on + strand, within Atu0212 at 216.776 kb on - strand, within Atu0212 at 216.806 kb on - strand, within Atu0212 at 216.812 kb on + strand, within Atu0212 at 216.883 kb on + strand, within Atu0212 at 216.995 kb on + strand at 217.003 kb on - strand at 217.013 kb on - strand at 217.049 kb on - strand at 217.104 kb on - strand at 217.154 kb on - strand at 217.275 kb on + strand, within Atu0213 at 217.275 kb on + strand, within Atu0213 at 217.275 kb on + strand, within Atu0213 at 217.275 kb on + strand, within Atu0213 at 217.283 kb on - strand, within Atu0213 at 217.283 kb on - strand, within Atu0213 at 217.310 kb on + strand, within Atu0213 at 217.310 kb on + strand, within Atu0213 at 217.346 kb on + strand, within Atu0213 at 217.431 kb on + strand, within Atu0213 at 217.468 kb on - strand, within Atu0213 at 217.608 kb on + strand, within Atu0213 at 217.641 kb on - strand, within Atu0213 at 217.641 kb on - strand, within Atu0213 at 217.768 kb on + strand, within Atu0213 at 217.776 kb on - strand, within Atu0213 at 217.789 kb on + strand, within Atu0213 at 217.834 kb on - strand, within Atu0213 at 217.941 kb on + strand, within Atu0213 at 218.034 kb on - strand, within Atu0213 at 218.078 kb on + strand, within Atu0213 at 218.128 kb on - strand, within Atu0213 at 218.129 kb on + strand, within Atu0213 at 218.145 kb on - strand, within Atu0213 at 218.164 kb on - strand, within Atu0213 at 218.201 kb on + strand, within Atu0213 at 218.214 kb on - strand, within Atu0213 at 218.236 kb on + strand, within Atu0213 at 218.313 kb on - strand at 218.321 kb on - strand at 218.415 kb on - strand at 218.415 kb on - strand at 218.468 kb on - strand at 218.582 kb on + strand at 218.629 kb on - strand, within Atu0214 at 218.640 kb on - strand, within Atu0214 at 218.801 kb on + strand, within Atu0214 at 218.807 kb on - strand, within Atu0214 at 218.807 kb on - strand, within Atu0214 at 218.823 kb on - strand, within Atu0214 at 218.844 kb on + strand, within Atu0214 at 218.872 kb on + strand, within Atu0214 at 218.872 kb on + strand, within Atu0214 at 218.872 kb on + strand, within Atu0214 at 218.892 kb on + strand, within Atu0214 at 218.892 kb on + strand, within Atu0214 at 218.892 kb on + strand, within Atu0214 at 218.970 kb on - strand, within Atu0214 at 219.083 kb on + strand, within Atu0214 at 219.084 kb on - strand, within Atu0214 at 219.126 kb on + strand, within Atu0214 at 219.148 kb on + strand, within Atu0214 at 219.177 kb on + strand, within Atu0214 at 219.253 kb on - strand, within Atu0214 at 219.258 kb on - strand, within Atu0214 at 219.322 kb on + strand, within Atu0214 at 219.327 kb on + strand, within Atu0214 at 219.327 kb on + strand, within Atu0214 at 219.327 kb on + strand, within Atu0214 at 219.335 kb on - strand, within Atu0214 at 219.396 kb on + strand, within Atu0214
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 216,157 - Atu0211 0.63 +1.0 216,236 - Atu0211 0.73 -0.0 216,497 - -0.2 216,515 + +0.3 216,533 - -0.1 216,533 - +0.2 216,608 + Atu0212 0.12 +0.7 216,718 + Atu0212 0.43 +0.8 216,776 - Atu0212 0.59 -0.6 216,806 - Atu0212 0.68 -0.2 216,812 + Atu0212 0.69 -0.0 216,883 + Atu0212 0.89 -1.2 216,995 + -0.5 217,003 - -0.1 217,013 - +1.0 217,049 - -1.0 217,104 - -0.4 217,154 - -0.3 217,275 + Atu0213 0.12 +1.1 217,275 + Atu0213 0.12 +0.8 217,275 + Atu0213 0.12 +0.3 217,275 + Atu0213 0.12 +1.0 217,283 - Atu0213 0.13 -0.1 217,283 - Atu0213 0.13 -0.3 217,310 + Atu0213 0.15 +0.2 217,310 + Atu0213 0.15 -0.6 217,346 + Atu0213 0.18 -0.1 217,431 + Atu0213 0.24 -1.5 217,468 - Atu0213 0.27 +0.7 217,608 + Atu0213 0.38 +2.8 217,641 - Atu0213 0.40 -2.0 217,641 - Atu0213 0.40 -1.3 217,768 + Atu0213 0.50 -1.3 217,776 - Atu0213 0.51 +0.5 217,789 + Atu0213 0.52 +0.5 217,834 - Atu0213 0.55 -1.0 217,941 + Atu0213 0.63 -0.5 218,034 - Atu0213 0.70 +0.7 218,078 + Atu0213 0.74 +1.4 218,128 - Atu0213 0.78 +0.6 218,129 + Atu0213 0.78 +0.7 218,145 - Atu0213 0.79 +0.1 218,164 - Atu0213 0.80 -1.1 218,201 + Atu0213 0.83 -0.4 218,214 - Atu0213 0.84 -1.3 218,236 + Atu0213 0.86 +3.0 218,313 - -0.7 218,321 - +0.5 218,415 - +1.5 218,415 - -0.9 218,468 - -1.1 218,582 + -1.8 218,629 - Atu0214 0.11 +0.9 218,640 - Atu0214 0.12 -1.5 218,801 + Atu0214 0.23 -1.0 218,807 - Atu0214 0.24 +0.0 218,807 - Atu0214 0.24 +0.1 218,823 - Atu0214 0.25 -0.5 218,844 + Atu0214 0.26 -1.3 218,872 + Atu0214 0.28 -1.2 218,872 + Atu0214 0.28 -0.3 218,872 + Atu0214 0.28 -0.8 218,892 + Atu0214 0.30 -0.3 218,892 + Atu0214 0.30 -1.3 218,892 + Atu0214 0.30 +0.0 218,970 - Atu0214 0.35 -0.2 219,083 + Atu0214 0.43 -0.7 219,084 - Atu0214 0.44 -0.7 219,126 + Atu0214 0.47 -0.3 219,148 + Atu0214 0.48 -0.7 219,177 + Atu0214 0.50 +0.3 219,253 - Atu0214 0.56 -0.2 219,258 - Atu0214 0.56 +0.5 219,322 + Atu0214 0.61 +1.1 219,327 + Atu0214 0.61 -1.0 219,327 + Atu0214 0.61 -1.0 219,327 + Atu0214 0.61 +0.3 219,335 - Atu0214 0.62 -1.1 219,396 + Atu0214 0.66 -2.4
Or see this region's nucleotide sequence