Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5512 and Atu5513 are separated by 116 nucleotides Atu5513 and Atu5514 are separated by 437 nucleotides Atu5514 and Atu5515 are separated by 218 nucleotides Atu5515 and Atu5516 overlap by 4 nucleotides
Atu5512: Atu5512 - hypothetical protein, at 505,590 to 505,814
Atu5512
Atu5513: Atu5513 - cold shock protein, at 505,931 to 506,155
Atu5513
Atu5514: Atu5514 - DnaJ family molecular chaperone, at 506,593 to 507,198
Atu5514
Atu5515: Atu5515 - hypothetical protein, at 507,417 to 507,599
Atu5515
Atu5516: Atu5516 - hypothetical protein, at 507,596 to 508,975
Atu5516
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 505.676 kb on + strand, within Atu5512 at 505.678 kb on + strand, within Atu5512 at 505.684 kb on - strand, within Atu5512 at 505.693 kb on + strand, within Atu5512 at 505.701 kb on - strand, within Atu5512 at 505.727 kb on - strand, within Atu5512 at 505.729 kb on + strand, within Atu5512 at 505.810 kb on + strand at 505.827 kb on - strand at 505.834 kb on - strand at 505.852 kb on + strand at 505.866 kb on + strand at 505.920 kb on + strand at 505.923 kb on - strand at 505.938 kb on - strand at 505.952 kb on + strand at 506.008 kb on - strand, within Atu5513 at 506.008 kb on - strand, within Atu5513 at 506.048 kb on + strand, within Atu5513 at 506.086 kb on + strand, within Atu5513 at 506.143 kb on - strand at 506.148 kb on - strand at 506.170 kb on - strand at 506.172 kb on + strand at 506.226 kb on + strand at 506.429 kb on + strand at 506.442 kb on + strand at 506.499 kb on - strand at 506.669 kb on - strand, within Atu5514 at 506.698 kb on - strand, within Atu5514 at 506.724 kb on - strand, within Atu5514 at 506.749 kb on - strand, within Atu5514 at 506.749 kb on - strand, within Atu5514 at 506.759 kb on + strand, within Atu5514 at 506.767 kb on - strand, within Atu5514 at 506.776 kb on + strand, within Atu5514 at 506.784 kb on - strand, within Atu5514 at 506.788 kb on + strand, within Atu5514 at 506.833 kb on + strand, within Atu5514 at 506.956 kb on + strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.979 kb on + strand, within Atu5514 at 506.981 kb on - strand, within Atu5514 at 506.984 kb on + strand, within Atu5514 at 507.023 kb on - strand, within Atu5514 at 507.040 kb on - strand, within Atu5514 at 507.041 kb on - strand, within Atu5514 at 507.077 kb on + strand, within Atu5514 at 507.173 kb on + strand at 507.303 kb on - strand at 507.358 kb on + strand at 507.394 kb on - strand at 507.410 kb on + strand at 507.447 kb on + strand, within Atu5515 at 507.447 kb on + strand, within Atu5515 at 507.447 kb on + strand, within Atu5515 at 507.447 kb on + strand, within Atu5515 at 507.455 kb on - strand, within Atu5515 at 507.455 kb on - strand, within Atu5515 at 507.569 kb on - strand, within Atu5515 at 507.571 kb on + strand, within Atu5515 at 507.580 kb on - strand, within Atu5515 at 507.607 kb on + strand at 507.627 kb on - strand at 507.627 kb on - strand at 507.712 kb on + strand at 507.769 kb on + strand, within Atu5516 at 507.777 kb on - strand, within Atu5516 at 507.777 kb on - strand, within Atu5516 at 507.777 kb on - strand, within Atu5516 at 507.785 kb on - strand, within Atu5516 at 507.832 kb on + strand, within Atu5516 at 507.852 kb on + strand, within Atu5516 at 507.862 kb on + strand, within Atu5516 at 507.864 kb on + strand, within Atu5516 at 507.904 kb on - strand, within Atu5516 at 507.904 kb on - strand, within Atu5516 at 507.975 kb on + strand, within Atu5516 at 508.064 kb on - strand, within Atu5516 at 508.068 kb on - strand, within Atu5516 at 508.082 kb on - strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.115 kb on + strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.123 kb on - strand, within Atu5516 at 508.146 kb on - strand, within Atu5516 at 508.156 kb on + strand, within Atu5516 at 508.182 kb on + strand, within Atu5516 at 508.182 kb on + strand, within Atu5516 at 508.182 kb on + strand, within Atu5516 at 508.190 kb on - strand, within Atu5516 at 508.190 kb on - strand, within Atu5516
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 505,676 + Atu5512 0.38 +0.2 505,678 + Atu5512 0.39 +0.4 505,684 - Atu5512 0.42 +1.4 505,693 + Atu5512 0.46 +1.5 505,701 - Atu5512 0.49 +1.8 505,727 - Atu5512 0.61 -0.7 505,729 + Atu5512 0.62 -1.1 505,810 + -0.0 505,827 - -2.5 505,834 - -0.0 505,852 + +2.8 505,866 + +0.4 505,920 + -1.5 505,923 - +0.3 505,938 - +0.3 505,952 + +0.4 506,008 - Atu5513 0.34 +1.3 506,008 - Atu5513 0.34 +0.2 506,048 + Atu5513 0.52 -0.7 506,086 + Atu5513 0.69 -1.9 506,143 - +0.9 506,148 - +0.5 506,170 - +0.5 506,172 + -0.5 506,226 + -1.2 506,429 + -0.2 506,442 + -2.4 506,499 - -0.2 506,669 - Atu5514 0.13 -1.4 506,698 - Atu5514 0.17 +1.4 506,724 - Atu5514 0.22 +2.7 506,749 - Atu5514 0.26 -1.7 506,749 - Atu5514 0.26 +1.1 506,759 + Atu5514 0.27 +1.1 506,767 - Atu5514 0.29 -0.1 506,776 + Atu5514 0.30 +0.6 506,784 - Atu5514 0.32 +2.3 506,788 + Atu5514 0.32 -1.5 506,833 + Atu5514 0.40 -0.7 506,956 + Atu5514 0.60 +0.3 506,971 - Atu5514 0.62 -0.3 506,971 - Atu5514 0.62 -1.7 506,971 - Atu5514 0.62 +0.6 506,971 - Atu5514 0.62 +0.7 506,979 + Atu5514 0.64 +0.9 506,981 - Atu5514 0.64 +0.2 506,984 + Atu5514 0.65 +2.7 507,023 - Atu5514 0.71 +0.2 507,040 - Atu5514 0.74 -0.7 507,041 - Atu5514 0.74 +0.2 507,077 + Atu5514 0.80 +0.2 507,173 + -0.8 507,303 - +0.3 507,358 + -0.3 507,394 - +1.2 507,410 + -0.1 507,447 + Atu5515 0.16 -0.9 507,447 + Atu5515 0.16 -2.5 507,447 + Atu5515 0.16 +0.1 507,447 + Atu5515 0.16 -0.3 507,455 - Atu5515 0.21 +0.0 507,455 - Atu5515 0.21 -0.5 507,569 - Atu5515 0.83 -0.2 507,571 + Atu5515 0.84 +0.1 507,580 - Atu5515 0.89 -0.9 507,607 + -1.9 507,627 - -1.1 507,627 - -1.4 507,712 + +0.5 507,769 + Atu5516 0.13 +1.9 507,777 - Atu5516 0.13 -0.9 507,777 - Atu5516 0.13 -0.6 507,777 - Atu5516 0.13 +0.2 507,785 - Atu5516 0.14 -0.1 507,832 + Atu5516 0.17 -0.2 507,852 + Atu5516 0.19 +2.7 507,862 + Atu5516 0.19 -0.8 507,864 + Atu5516 0.19 +0.2 507,904 - Atu5516 0.22 +1.0 507,904 - Atu5516 0.22 +0.0 507,975 + Atu5516 0.27 +1.1 508,064 - Atu5516 0.34 -1.5 508,068 - Atu5516 0.34 -1.6 508,082 - Atu5516 0.35 -2.2 508,115 + Atu5516 0.38 -0.6 508,115 + Atu5516 0.38 +1.3 508,115 + Atu5516 0.38 -1.1 508,115 + Atu5516 0.38 -0.8 508,115 + Atu5516 0.38 -0.1 508,115 + Atu5516 0.38 -0.4 508,115 + Atu5516 0.38 -0.9 508,115 + Atu5516 0.38 -0.0 508,115 + Atu5516 0.38 -0.1 508,115 + Atu5516 0.38 +2.1 508,115 + Atu5516 0.38 -1.4 508,115 + Atu5516 0.38 -1.7 508,123 - Atu5516 0.38 -1.8 508,123 - Atu5516 0.38 -0.9 508,123 - Atu5516 0.38 -0.2 508,123 - Atu5516 0.38 +0.1 508,123 - Atu5516 0.38 -0.9 508,123 - Atu5516 0.38 +1.4 508,123 - Atu5516 0.38 +0.1 508,123 - Atu5516 0.38 +0.7 508,123 - Atu5516 0.38 -0.1 508,123 - Atu5516 0.38 -0.0 508,123 - Atu5516 0.38 +0.4 508,123 - Atu5516 0.38 +1.3 508,123 - Atu5516 0.38 -0.4 508,123 - Atu5516 0.38 +0.3 508,146 - Atu5516 0.40 -0.2 508,156 + Atu5516 0.41 -2.1 508,182 + Atu5516 0.42 +0.3 508,182 + Atu5516 0.42 +0.8 508,182 + Atu5516 0.42 +1.1 508,190 - Atu5516 0.43 +0.5 508,190 - Atu5516 0.43 -0.0
Or see this region's nucleotide sequence