Strain Fitness in Agrobacterium fabrum C58 around Atu5496

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5495 and Atu5496 are separated by 237 nucleotidesAtu5496 and Atu5497 are separated by 264 nucleotides Atu5495: Atu5495 - hydrolase, at 485,227 to 486,087 Atu5495 Atu5496: Atu5496 - TetR family transcriptional regulator, at 486,325 to 486,867 Atu5496 Atu5497: Atu5497 - hypothetical protein, at 487,132 to 488,121 Atu5497 Position (kb) 486 487Strain fitness (log2 ratio) -2 -1 0 1 2at 485.328 kb on + strand, within Atu5495at 485.328 kb on + strand, within Atu5495at 485.328 kb on + strand, within Atu5495at 485.336 kb on - strand, within Atu5495at 485.336 kb on - strand, within Atu5495at 485.336 kb on - strand, within Atu5495at 485.345 kb on - strand, within Atu5495at 485.349 kb on + strand, within Atu5495at 485.357 kb on - strand, within Atu5495at 485.357 kb on - strand, within Atu5495at 485.362 kb on - strand, within Atu5495at 485.372 kb on - strand, within Atu5495at 485.388 kb on + strand, within Atu5495at 485.408 kb on + strand, within Atu5495at 485.443 kb on - strand, within Atu5495at 485.443 kb on - strand, within Atu5495at 485.455 kb on + strand, within Atu5495at 485.463 kb on - strand, within Atu5495at 485.473 kb on + strand, within Atu5495at 485.481 kb on - strand, within Atu5495at 485.481 kb on - strand, within Atu5495at 485.539 kb on - strand, within Atu5495at 485.562 kb on - strand, within Atu5495at 485.566 kb on + strand, within Atu5495at 485.566 kb on + strand, within Atu5495at 485.566 kb on + strand, within Atu5495at 485.566 kb on + strand, within Atu5495at 485.574 kb on - strand, within Atu5495at 485.574 kb on - strand, within Atu5495at 485.604 kb on + strand, within Atu5495at 485.675 kb on + strand, within Atu5495at 485.725 kb on - strand, within Atu5495at 485.794 kb on + strand, within Atu5495at 485.802 kb on - strand, within Atu5495at 485.802 kb on - strand, within Atu5495at 485.812 kb on + strand, within Atu5495at 485.815 kb on - strand, within Atu5495at 485.837 kb on + strand, within Atu5495at 485.854 kb on + strand, within Atu5495at 485.875 kb on + strand, within Atu5495at 485.936 kb on + strand, within Atu5495at 485.944 kb on - strand, within Atu5495at 485.946 kb on + strand, within Atu5495at 486.005 kb on - strandat 486.019 kb on + strandat 486.024 kb on + strandat 486.051 kb on - strandat 486.051 kb on - strandat 486.062 kb on + strandat 486.095 kb on - strandat 486.165 kb on + strandat 486.201 kb on + strandat 486.209 kb on - strandat 486.209 kb on - strandat 486.395 kb on + strand, within Atu5496at 486.403 kb on - strand, within Atu5496at 486.406 kb on - strand, within Atu5496at 486.408 kb on - strand, within Atu5496at 486.424 kb on + strand, within Atu5496at 486.445 kb on - strand, within Atu5496at 486.456 kb on - strand, within Atu5496at 486.473 kb on + strand, within Atu5496at 486.478 kb on + strand, within Atu5496at 486.531 kb on + strand, within Atu5496at 486.577 kb on - strand, within Atu5496at 486.668 kb on + strand, within Atu5496at 486.668 kb on - strand, within Atu5496at 486.678 kb on + strand, within Atu5496at 486.693 kb on + strand, within Atu5496at 486.714 kb on + strand, within Atu5496at 486.714 kb on - strand, within Atu5496at 486.719 kb on - strand, within Atu5496at 486.720 kb on - strand, within Atu5496at 486.731 kb on + strand, within Atu5496at 486.756 kb on + strand, within Atu5496at 486.909 kb on + strandat 486.909 kb on + strandat 486.917 kb on - strandat 486.923 kb on - strandat 487.077 kb on - strandat 487.077 kb on - strandat 487.106 kb on + strandat 487.129 kb on + strandat 487.263 kb on - strand, within Atu5497at 487.283 kb on + strand, within Atu5497at 487.283 kb on + strand, within Atu5497at 487.349 kb on + strand, within Atu5497at 487.353 kb on + strand, within Atu5497at 487.353 kb on + strand, within Atu5497at 487.361 kb on - strand, within Atu5497at 487.523 kb on + strand, within Atu5497at 487.531 kb on - strand, within Atu5497at 487.560 kb on - strand, within Atu5497at 487.571 kb on - strand, within Atu5497at 487.601 kb on + strand, within Atu5497at 487.601 kb on + strand, within Atu5497at 487.625 kb on + strand, within Atu5497at 487.654 kb on - strand, within Atu5497at 487.708 kb on - strand, within Atu5497at 487.812 kb on - strand, within Atu5497

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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485,328 + Atu5495 0.12 +0.5
485,328 + Atu5495 0.12 +1.6
485,328 + Atu5495 0.12 +0.2
485,336 - Atu5495 0.13 -0.2
485,336 - Atu5495 0.13 -1.4
485,336 - Atu5495 0.13 +2.4
485,345 - Atu5495 0.14 -0.2
485,349 + Atu5495 0.14 +0.4
485,357 - Atu5495 0.15 -0.0
485,357 - Atu5495 0.15 -0.1
485,362 - Atu5495 0.16 -0.4
485,372 - Atu5495 0.17 -0.0
485,388 + Atu5495 0.19 +0.6
485,408 + Atu5495 0.21 +1.6
485,443 - Atu5495 0.25 -1.9
485,443 - Atu5495 0.25 +0.4
485,455 + Atu5495 0.26 -0.9
485,463 - Atu5495 0.27 -1.0
485,473 + Atu5495 0.29 -0.7
485,481 - Atu5495 0.30 +0.4
485,481 - Atu5495 0.30 +0.6
485,539 - Atu5495 0.36 +0.4
485,562 - Atu5495 0.39 +1.2
485,566 + Atu5495 0.39 +0.4
485,566 + Atu5495 0.39 +0.1
485,566 + Atu5495 0.39 -0.8
485,566 + Atu5495 0.39 -0.5
485,574 - Atu5495 0.40 +0.3
485,574 - Atu5495 0.40 -2.2
485,604 + Atu5495 0.44 -0.5
485,675 + Atu5495 0.52 -0.8
485,725 - Atu5495 0.58 -0.3
485,794 + Atu5495 0.66 -0.5
485,802 - Atu5495 0.67 -0.8
485,802 - Atu5495 0.67 -0.0
485,812 + Atu5495 0.68 +0.5
485,815 - Atu5495 0.68 -0.5
485,837 + Atu5495 0.71 -1.5
485,854 + Atu5495 0.73 +0.5
485,875 + Atu5495 0.75 +0.6
485,936 + Atu5495 0.82 -2.2
485,944 - Atu5495 0.83 +2.1
485,946 + Atu5495 0.84 +1.1
486,005 - -0.6
486,019 + -0.0
486,024 + -1.4
486,051 - -0.7
486,051 - +0.1
486,062 + -0.8
486,095 - +0.1
486,165 + +0.1
486,201 + -0.5
486,209 - -0.4
486,209 - -0.2
486,395 + Atu5496 0.13 -1.5
486,403 - Atu5496 0.14 -0.1
486,406 - Atu5496 0.15 +0.1
486,408 - Atu5496 0.15 +0.1
486,424 + Atu5496 0.18 -1.5
486,445 - Atu5496 0.22 -0.3
486,456 - Atu5496 0.24 -0.1
486,473 + Atu5496 0.27 +1.0
486,478 + Atu5496 0.28 +0.1
486,531 + Atu5496 0.38 -0.4
486,577 - Atu5496 0.46 -1.7
486,668 + Atu5496 0.63 +1.1
486,668 - Atu5496 0.63 -0.2
486,678 + Atu5496 0.65 -1.0
486,693 + Atu5496 0.68 +0.1
486,714 + Atu5496 0.72 -1.6
486,714 - Atu5496 0.72 +0.3
486,719 - Atu5496 0.73 -0.2
486,720 - Atu5496 0.73 -0.9
486,731 + Atu5496 0.75 -2.7
486,756 + Atu5496 0.79 -0.2
486,909 + -1.7
486,909 + -0.8
486,917 - -0.6
486,923 - -0.9
487,077 - +0.8
487,077 - -0.1
487,106 + +0.1
487,129 + -1.0
487,263 - Atu5497 0.13 +0.5
487,283 + Atu5497 0.15 +0.3
487,283 + Atu5497 0.15 +1.2
487,349 + Atu5497 0.22 +0.9
487,353 + Atu5497 0.22 +0.1
487,353 + Atu5497 0.22 +0.1
487,361 - Atu5497 0.23 +0.8
487,523 + Atu5497 0.39 +0.7
487,531 - Atu5497 0.40 -0.5
487,560 - Atu5497 0.43 -0.2
487,571 - Atu5497 0.44 -1.4
487,601 + Atu5497 0.47 -0.2
487,601 + Atu5497 0.47 +0.6
487,625 + Atu5497 0.50 +0.1
487,654 - Atu5497 0.53 -0.5
487,708 - Atu5497 0.58 +1.7
487,812 - Atu5497 0.69 -0.2

Or see this region's nucleotide sequence