Strain Fitness in Agrobacterium fabrum C58 around Atu5460

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5459 and Atu5460 are separated by 83 nucleotidesAtu5460 and Atu5461 are separated by 10 nucleotidesAtu5461 and Atu5462 are separated by 2 nucleotides Atu5459: Atu5459 - ABC transporter substrate binding protein (sugar), at 451,507 to 452,778 Atu5459 Atu5460: Atu5460 - ABC transporter membrane spanning protein, at 452,862 to 453,788 Atu5460 Atu5461: Atu5461 - ABC transporter membrane spanning protein, at 453,799 to 454,629 Atu5461 Atu5462: Atu5462 - ABC transporter nucleotide binding/ATPase, at 454,632 to 455,714 Atu5462 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 451.905 kb on + strand, within Atu5459at 451.906 kb on + strand, within Atu5459at 451.907 kb on + strand, within Atu5459at 451.913 kb on - strand, within Atu5459at 451.951 kb on + strand, within Atu5459at 452.022 kb on + strand, within Atu5459at 452.070 kb on + strand, within Atu5459at 452.070 kb on + strand, within Atu5459at 452.089 kb on + strand, within Atu5459at 452.159 kb on - strand, within Atu5459at 452.200 kb on + strand, within Atu5459at 452.208 kb on - strand, within Atu5459at 452.217 kb on + strand, within Atu5459at 452.259 kb on - strand, within Atu5459at 452.318 kb on + strand, within Atu5459at 452.326 kb on - strand, within Atu5459at 452.327 kb on - strand, within Atu5459at 452.367 kb on + strand, within Atu5459at 452.593 kb on - strand, within Atu5459at 452.744 kb on - strandat 452.751 kb on + strandat 452.772 kb on + strandat 452.788 kb on + strandat 452.807 kb on + strandat 452.824 kb on + strandat 452.830 kb on - strandat 452.935 kb on + strandat 452.935 kb on + strandat 452.943 kb on - strandat 452.966 kb on - strand, within Atu5460at 452.966 kb on - strand, within Atu5460at 452.966 kb on - strand, within Atu5460at 453.031 kb on - strand, within Atu5460at 453.071 kb on + strand, within Atu5460at 453.073 kb on + strand, within Atu5460at 453.082 kb on - strand, within Atu5460at 453.118 kb on + strand, within Atu5460at 453.124 kb on + strand, within Atu5460at 453.124 kb on + strand, within Atu5460at 453.134 kb on + strand, within Atu5460at 453.134 kb on + strand, within Atu5460at 453.163 kb on + strand, within Atu5460at 453.232 kb on - strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.239 kb on + strand, within Atu5460at 453.242 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.247 kb on - strand, within Atu5460at 453.269 kb on + strand, within Atu5460at 453.354 kb on - strand, within Atu5460at 453.412 kb on - strand, within Atu5460at 453.463 kb on - strand, within Atu5460at 453.510 kb on - strand, within Atu5460at 453.564 kb on - strand, within Atu5460at 453.578 kb on + strand, within Atu5460at 453.578 kb on + strand, within Atu5460at 453.586 kb on - strand, within Atu5460at 453.642 kb on + strand, within Atu5460at 453.672 kb on - strand, within Atu5460at 453.717 kb on + strandat 453.726 kb on + strandat 453.820 kb on + strandat 453.829 kb on + strandat 453.863 kb on - strandat 453.983 kb on - strand, within Atu5461at 454.006 kb on - strand, within Atu5461at 454.100 kb on + strand, within Atu5461at 454.103 kb on - strand, within Atu5461at 454.108 kb on - strand, within Atu5461at 454.124 kb on - strand, within Atu5461at 454.267 kb on + strand, within Atu5461at 454.298 kb on + strand, within Atu5461at 454.348 kb on - strand, within Atu5461at 454.348 kb on - strand, within Atu5461at 454.404 kb on - strand, within Atu5461at 454.404 kb on - strand, within Atu5461at 454.404 kb on - strand, within Atu5461at 454.416 kb on - strand, within Atu5461at 454.418 kb on + strand, within Atu5461at 454.423 kb on + strand, within Atu5461at 454.426 kb on - strand, within Atu5461at 454.427 kb on + strand, within Atu5461at 454.431 kb on - strand, within Atu5461at 454.498 kb on - strand, within Atu5461at 454.555 kb on + strandat 454.578 kb on - strandat 454.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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451,905 + Atu5459 0.31 -0.1
451,906 + Atu5459 0.31 +0.6
451,907 + Atu5459 0.31 -0.4
451,913 - Atu5459 0.32 +0.1
451,951 + Atu5459 0.35 -0.1
452,022 + Atu5459 0.40 +0.2
452,070 + Atu5459 0.44 -0.5
452,070 + Atu5459 0.44 -1.7
452,089 + Atu5459 0.46 +0.2
452,159 - Atu5459 0.51 -0.2
452,200 + Atu5459 0.54 +0.1
452,208 - Atu5459 0.55 -0.5
452,217 + Atu5459 0.56 -0.6
452,259 - Atu5459 0.59 +1.1
452,318 + Atu5459 0.64 +0.4
452,326 - Atu5459 0.64 +0.1
452,327 - Atu5459 0.64 -0.4
452,367 + Atu5459 0.68 +0.0
452,593 - Atu5459 0.85 +0.5
452,744 - -0.5
452,751 + -0.4
452,772 + -0.9
452,788 + -0.0
452,807 + +0.2
452,824 + -2.8
452,830 - +0.7
452,935 + -0.1
452,935 + -2.1
452,943 - +0.1
452,966 - Atu5460 0.11 -0.3
452,966 - Atu5460 0.11 +0.6
452,966 - Atu5460 0.11 -2.1
453,031 - Atu5460 0.18 +2.7
453,071 + Atu5460 0.23 +0.1
453,073 + Atu5460 0.23 +1.3
453,082 - Atu5460 0.24 -0.7
453,118 + Atu5460 0.28 -0.5
453,124 + Atu5460 0.28 -0.2
453,124 + Atu5460 0.28 -0.5
453,134 + Atu5460 0.29 +0.9
453,134 + Atu5460 0.29 -0.4
453,163 + Atu5460 0.32 +1.0
453,232 - Atu5460 0.40 -0.2
453,239 + Atu5460 0.41 -1.3
453,239 + Atu5460 0.41 +0.1
453,239 + Atu5460 0.41 +0.3
453,239 + Atu5460 0.41 +0.3
453,239 + Atu5460 0.41 +0.1
453,239 + Atu5460 0.41 +0.5
453,239 + Atu5460 0.41 -1.0
453,239 + Atu5460 0.41 +0.5
453,239 + Atu5460 0.41 -0.7
453,239 + Atu5460 0.41 -0.9
453,239 + Atu5460 0.41 -0.6
453,239 + Atu5460 0.41 -0.7
453,239 + Atu5460 0.41 -0.2
453,239 + Atu5460 0.41 -1.5
453,242 - Atu5460 0.41 -1.0
453,247 - Atu5460 0.42 -2.3
453,247 - Atu5460 0.42 -1.7
453,247 - Atu5460 0.42 -1.1
453,247 - Atu5460 0.42 -0.2
453,247 - Atu5460 0.42 -1.2
453,247 - Atu5460 0.42 -0.6
453,247 - Atu5460 0.42 +0.1
453,247 - Atu5460 0.42 -0.9
453,247 - Atu5460 0.42 -0.7
453,247 - Atu5460 0.42 -0.3
453,247 - Atu5460 0.42 -1.9
453,269 + Atu5460 0.44 +0.8
453,354 - Atu5460 0.53 +0.1
453,412 - Atu5460 0.59 +0.0
453,463 - Atu5460 0.65 -0.5
453,510 - Atu5460 0.70 -0.0
453,564 - Atu5460 0.76 -0.6
453,578 + Atu5460 0.77 +2.1
453,578 + Atu5460 0.77 -1.6
453,586 - Atu5460 0.78 -0.2
453,642 + Atu5460 0.84 -0.9
453,672 - Atu5460 0.87 -0.4
453,717 + -0.1
453,726 + -0.1
453,820 + +0.3
453,829 + +1.1
453,863 - +0.8
453,983 - Atu5461 0.22 +1.0
454,006 - Atu5461 0.25 -1.4
454,100 + Atu5461 0.36 +1.3
454,103 - Atu5461 0.37 -0.4
454,108 - Atu5461 0.37 +0.6
454,124 - Atu5461 0.39 +0.2
454,267 + Atu5461 0.56 -1.2
454,298 + Atu5461 0.60 -0.3
454,348 - Atu5461 0.66 +1.2
454,348 - Atu5461 0.66 -2.1
454,404 - Atu5461 0.73 -0.0
454,404 - Atu5461 0.73 -0.1
454,404 - Atu5461 0.73 -0.1
454,416 - Atu5461 0.74 +0.5
454,418 + Atu5461 0.74 -0.4
454,423 + Atu5461 0.75 +0.1
454,426 - Atu5461 0.75 -0.2
454,427 + Atu5461 0.76 +0.0
454,431 - Atu5461 0.76 +0.2
454,498 - Atu5461 0.84 -0.5
454,555 + +0.5
454,578 - +1.1
454,728 + +0.1

Or see this region's nucleotide sequence