Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3785 and Atu3786 are separated by 32 nucleotides Atu3786 and Atu3787 are separated by 60 nucleotides Atu3787 and Atu3788 are separated by 54 nucleotides Atu3788 and Atu3789 are separated by 12 nucleotides
Atu3785: Atu3785 - threonine aldolase, at 873,534 to 874,586
Atu3785
Atu3786: Atu3786 - two component response regulator, at 874,619 to 875,308
Atu3786
Atu3787: Atu3787 - two component sensor kinase, at 875,369 to 878,071
Atu3787
Atu3788: Atu3788 - potassium-transporting ATPase subunit C, at 878,126 to 878,692
Atu3788
Atu3789: Atu3789 - potassium-transporting ATPase subunit B, at 878,705 to 880,789
Atu3789
Position (kb) 875
876
877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 874.409 kb on + strand, within Atu3785 at 874.409 kb on + strand, within Atu3785 at 874.417 kb on - strand, within Atu3785 at 874.451 kb on + strand, within Atu3785 at 874.462 kb on + strand, within Atu3785 at 874.470 kb on - strand, within Atu3785 at 874.470 kb on - strand, within Atu3785 at 874.470 kb on - strand, within Atu3785 at 874.506 kb on + strand at 874.514 kb on - strand at 874.514 kb on - strand at 874.514 kb on - strand at 874.528 kb on + strand at 874.551 kb on - strand at 874.625 kb on - strand at 874.635 kb on + strand at 874.766 kb on - strand, within Atu3786 at 874.912 kb on - strand, within Atu3786 at 874.929 kb on + strand, within Atu3786 at 875.047 kb on - strand, within Atu3786 at 875.060 kb on - strand, within Atu3786 at 875.078 kb on + strand, within Atu3786 at 875.086 kb on - strand, within Atu3786 at 875.174 kb on + strand, within Atu3786 at 875.215 kb on + strand, within Atu3786 at 875.215 kb on + strand, within Atu3786 at 875.339 kb on + strand at 875.450 kb on - strand at 875.505 kb on - strand at 875.514 kb on + strand at 875.514 kb on + strand at 875.522 kb on - strand at 875.535 kb on + strand at 875.632 kb on + strand at 875.665 kb on - strand, within Atu3787 at 875.822 kb on - strand, within Atu3787 at 875.862 kb on - strand, within Atu3787 at 875.872 kb on - strand, within Atu3787 at 875.915 kb on - strand, within Atu3787 at 875.934 kb on + strand, within Atu3787 at 876.005 kb on + strand, within Atu3787 at 876.050 kb on + strand, within Atu3787 at 876.099 kb on - strand, within Atu3787 at 876.104 kb on - strand, within Atu3787 at 876.106 kb on + strand, within Atu3787 at 876.121 kb on + strand, within Atu3787 at 876.311 kb on + strand, within Atu3787 at 876.316 kb on + strand, within Atu3787 at 876.416 kb on - strand, within Atu3787 at 876.421 kb on - strand, within Atu3787 at 876.423 kb on + strand, within Atu3787 at 876.423 kb on + strand, within Atu3787 at 876.431 kb on - strand, within Atu3787 at 876.462 kb on + strand, within Atu3787 at 876.657 kb on + strand, within Atu3787 at 876.691 kb on + strand, within Atu3787 at 876.718 kb on + strand, within Atu3787 at 876.752 kb on - strand, within Atu3787 at 876.859 kb on - strand, within Atu3787 at 876.976 kb on + strand, within Atu3787 at 876.976 kb on + strand, within Atu3787 at 876.976 kb on + strand, within Atu3787 at 877.084 kb on - strand, within Atu3787 at 877.127 kb on + strand, within Atu3787 at 877.213 kb on - strand, within Atu3787 at 877.285 kb on + strand, within Atu3787 at 877.340 kb on + strand, within Atu3787 at 877.350 kb on + strand, within Atu3787 at 877.401 kb on - strand, within Atu3787 at 877.418 kb on - strand, within Atu3787 at 877.467 kb on + strand, within Atu3787 at 877.476 kb on - strand, within Atu3787 at 877.504 kb on - strand, within Atu3787 at 877.518 kb on - strand, within Atu3787 at 877.564 kb on - strand, within Atu3787 at 877.587 kb on - strand, within Atu3787 at 877.597 kb on - strand, within Atu3787 at 877.612 kb on + strand, within Atu3787 at 877.632 kb on - strand, within Atu3787 at 877.688 kb on - strand, within Atu3787 at 877.713 kb on + strand, within Atu3787 at 877.713 kb on + strand, within Atu3787 at 877.721 kb on - strand, within Atu3787 at 877.750 kb on - strand, within Atu3787 at 877.760 kb on + strand, within Atu3787 at 877.792 kb on + strand, within Atu3787 at 877.809 kb on + strand at 877.831 kb on + strand at 877.839 kb on - strand at 878.069 kb on + strand at 878.089 kb on + strand at 878.241 kb on + strand, within Atu3788 at 878.336 kb on + strand, within Atu3788 at 878.442 kb on - strand, within Atu3788 at 878.459 kb on + strand, within Atu3788 at 878.467 kb on - strand, within Atu3788 at 878.499 kb on - strand, within Atu3788 at 878.511 kb on + strand, within Atu3788 at 878.523 kb on - strand, within Atu3788 at 878.607 kb on - strand, within Atu3788 at 878.618 kb on - strand, within Atu3788 at 878.657 kb on + strand at 878.711 kb on - strand at 878.711 kb on - strand at 878.713 kb on + strand at 878.720 kb on - strand at 878.861 kb on - strand at 878.919 kb on + strand, within Atu3789 at 878.920 kb on - strand, within Atu3789 at 878.927 kb on - strand, within Atu3789 at 879.031 kb on - strand, within Atu3789
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 874,409 + Atu3785 0.83 -0.2 874,409 + Atu3785 0.83 -0.5 874,417 - Atu3785 0.84 -0.2 874,451 + Atu3785 0.87 -0.9 874,462 + Atu3785 0.88 -0.0 874,470 - Atu3785 0.89 -0.8 874,470 - Atu3785 0.89 -0.3 874,470 - Atu3785 0.89 -0.3 874,506 + +0.1 874,514 - -0.4 874,514 - -0.5 874,514 - +0.7 874,528 + -2.1 874,551 - -0.0 874,625 - -0.1 874,635 + -1.0 874,766 - Atu3786 0.21 -0.9 874,912 - Atu3786 0.42 +0.8 874,929 + Atu3786 0.45 +0.1 875,047 - Atu3786 0.62 -1.0 875,060 - Atu3786 0.64 -0.7 875,078 + Atu3786 0.67 +0.3 875,086 - Atu3786 0.68 -0.3 875,174 + Atu3786 0.80 +0.7 875,215 + Atu3786 0.86 -0.8 875,215 + Atu3786 0.86 +0.9 875,339 + -1.8 875,450 - -0.1 875,505 - +1.0 875,514 + -0.4 875,514 + -0.9 875,522 - -0.5 875,535 + -1.1 875,632 + -0.2 875,665 - Atu3787 0.11 -0.1 875,822 - Atu3787 0.17 +0.1 875,862 - Atu3787 0.18 -1.1 875,872 - Atu3787 0.19 +0.8 875,915 - Atu3787 0.20 +0.4 875,934 + Atu3787 0.21 -0.8 876,005 + Atu3787 0.24 -1.7 876,050 + Atu3787 0.25 +0.2 876,099 - Atu3787 0.27 +0.5 876,104 - Atu3787 0.27 -0.9 876,106 + Atu3787 0.27 +1.2 876,121 + Atu3787 0.28 +0.4 876,311 + Atu3787 0.35 +1.0 876,316 + Atu3787 0.35 +0.9 876,416 - Atu3787 0.39 -0.7 876,421 - Atu3787 0.39 -0.1 876,423 + Atu3787 0.39 -1.7 876,423 + Atu3787 0.39 -0.1 876,431 - Atu3787 0.39 +1.4 876,462 + Atu3787 0.40 +0.3 876,657 + Atu3787 0.48 +0.0 876,691 + Atu3787 0.49 -0.1 876,718 + Atu3787 0.50 -0.4 876,752 - Atu3787 0.51 -0.6 876,859 - Atu3787 0.55 +2.0 876,976 + Atu3787 0.59 -0.1 876,976 + Atu3787 0.59 +0.7 876,976 + Atu3787 0.59 +0.5 877,084 - Atu3787 0.63 +0.3 877,127 + Atu3787 0.65 +0.7 877,213 - Atu3787 0.68 +0.9 877,285 + Atu3787 0.71 -0.1 877,340 + Atu3787 0.73 -0.2 877,350 + Atu3787 0.73 -0.4 877,401 - Atu3787 0.75 +2.6 877,418 - Atu3787 0.76 -0.6 877,467 + Atu3787 0.78 +0.2 877,476 - Atu3787 0.78 -0.2 877,504 - Atu3787 0.79 +1.2 877,518 - Atu3787 0.80 -0.9 877,564 - Atu3787 0.81 -1.8 877,587 - Atu3787 0.82 +0.8 877,597 - Atu3787 0.82 -0.8 877,612 + Atu3787 0.83 -2.4 877,632 - Atu3787 0.84 +0.2 877,688 - Atu3787 0.86 -0.4 877,713 + Atu3787 0.87 -0.7 877,713 + Atu3787 0.87 +0.2 877,721 - Atu3787 0.87 +0.6 877,750 - Atu3787 0.88 +0.4 877,760 + Atu3787 0.88 -1.8 877,792 + Atu3787 0.90 +0.6 877,809 + +1.2 877,831 + -0.5 877,839 - +2.6 878,069 + -0.2 878,089 + +0.2 878,241 + Atu3788 0.20 -2.6 878,336 + Atu3788 0.37 +0.1 878,442 - Atu3788 0.56 -1.2 878,459 + Atu3788 0.59 -0.0 878,467 - Atu3788 0.60 +0.2 878,499 - Atu3788 0.66 -0.9 878,511 + Atu3788 0.68 +0.1 878,523 - Atu3788 0.70 -0.5 878,607 - Atu3788 0.85 -0.8 878,618 - Atu3788 0.87 +0.8 878,657 + -2.0 878,711 - +0.3 878,711 - -2.1 878,713 + +1.6 878,720 - -0.5 878,861 - +4.1 878,919 + Atu3789 0.10 +0.3 878,920 - Atu3789 0.10 -0.2 878,927 - Atu3789 0.11 -1.0 879,031 - Atu3789 0.16 -0.8
Or see this region's nucleotide sequence