Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3777 and Atu3778 are separated by 60 nucleotides Atu3778 and Atu3779 are separated by 195 nucleotides
Atu3777: Atu3777 - hypothetical protein, at 859,271 to 860,764
Atu3777
Atu3778: Atu3778 - UTP-glucose-1-phosphate uridylyltransferase, at 860,825 to 861,712
Atu3778
Atu3779: Atu3779 - lytic murein transglycosylase, at 861,908 to 863,128
Atu3779
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 859.972 kb on + strand, within Atu3777 at 859.984 kb on + strand, within Atu3777 at 859.992 kb on - strand, within Atu3777 at 859.994 kb on + strand, within Atu3777 at 859.997 kb on - strand, within Atu3777 at 860.105 kb on + strand, within Atu3777 at 860.133 kb on + strand, within Atu3777 at 860.162 kb on + strand, within Atu3777 at 860.174 kb on + strand, within Atu3777 at 860.189 kb on - strand, within Atu3777 at 860.206 kb on - strand, within Atu3777 at 860.534 kb on - strand, within Atu3777 at 860.652 kb on + strand at 860.653 kb on - strand at 860.795 kb on + strand at 860.835 kb on + strand at 860.855 kb on - strand at 861.084 kb on - strand, within Atu3778 at 861.111 kb on + strand, within Atu3778 at 861.149 kb on + strand, within Atu3778 at 861.224 kb on - strand, within Atu3778 at 861.234 kb on + strand, within Atu3778 at 861.336 kb on - strand, within Atu3778 at 861.367 kb on + strand, within Atu3778 at 861.402 kb on - strand, within Atu3778 at 861.414 kb on + strand, within Atu3778 at 861.422 kb on - strand, within Atu3778 at 861.527 kb on - strand, within Atu3778 at 861.527 kb on - strand, within Atu3778 at 861.660 kb on - strand at 861.677 kb on + strand at 861.998 kb on + strand at 862.060 kb on - strand, within Atu3779 at 862.117 kb on + strand, within Atu3779 at 862.177 kb on + strand, within Atu3779 at 862.185 kb on + strand, within Atu3779 at 862.237 kb on + strand, within Atu3779 at 862.237 kb on + strand, within Atu3779 at 862.327 kb on + strand, within Atu3779 at 862.352 kb on - strand, within Atu3779 at 862.369 kb on + strand, within Atu3779 at 862.369 kb on + strand, within Atu3779 at 862.460 kb on - strand, within Atu3779 at 862.509 kb on - strand, within Atu3779 at 862.546 kb on - strand, within Atu3779 at 862.620 kb on + strand, within Atu3779
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 859,972 + Atu3777 0.47 -0.5 859,984 + Atu3777 0.48 +0.1 859,992 - Atu3777 0.48 -0.1 859,994 + Atu3777 0.48 +1.5 859,997 - Atu3777 0.49 -1.1 860,105 + Atu3777 0.56 -0.5 860,133 + Atu3777 0.58 -0.5 860,162 + Atu3777 0.60 +4.9 860,174 + Atu3777 0.60 +0.2 860,189 - Atu3777 0.61 -0.8 860,206 - Atu3777 0.63 -2.6 860,534 - Atu3777 0.85 +0.0 860,652 + -0.2 860,653 - -2.3 860,795 + -0.6 860,835 + +0.1 860,855 - +0.6 861,084 - Atu3778 0.29 +0.1 861,111 + Atu3778 0.32 -0.1 861,149 + Atu3778 0.36 -2.2 861,224 - Atu3778 0.45 +1.0 861,234 + Atu3778 0.46 +0.4 861,336 - Atu3778 0.58 -0.2 861,367 + Atu3778 0.61 -0.5 861,402 - Atu3778 0.65 +0.8 861,414 + Atu3778 0.66 -0.6 861,422 - Atu3778 0.67 -0.0 861,527 - Atu3778 0.79 +0.9 861,527 - Atu3778 0.79 +0.5 861,660 - +1.4 861,677 + -2.1 861,998 + +0.2 862,060 - Atu3779 0.12 +0.2 862,117 + Atu3779 0.17 -0.8 862,177 + Atu3779 0.22 -0.2 862,185 + Atu3779 0.23 +0.3 862,237 + Atu3779 0.27 -0.2 862,237 + Atu3779 0.27 +1.0 862,327 + Atu3779 0.34 -0.0 862,352 - Atu3779 0.36 +0.3 862,369 + Atu3779 0.38 -0.5 862,369 + Atu3779 0.38 +0.2 862,460 - Atu3779 0.45 -0.8 862,509 - Atu3779 0.49 +0.3 862,546 - Atu3779 0.52 +0.1 862,620 + Atu3779 0.58 +0.2
Or see this region's nucleotide sequence