Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8188 and Atu3525 are separated by 52 nucleotides Atu3525 and Atu3526 are separated by 357 nucleotides Atu3526 and Atu3527 are separated by 61 nucleotides
Atu8188: Atu8188 - hypothetical protein, at 573,771 to 575,042
Atu8188
Atu3525: Atu3525 - hypothetical protein, at 575,095 to 575,757
Atu3525
Atu3526: Atu3526 - tRNA-Leu, at 576,115 to 576,199
Atu3526
Atu3527: Atu3527 - hypothetical protein, at 576,261 to 577,103
Atu3527
Position (kb) 575
576 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 574.189 kb on - strand, within Atu8188 at 574.314 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on - strand, within Atu8188 at 574.422 kb on - strand, within Atu8188 at 574.454 kb on - strand, within Atu8188 at 574.479 kb on + strand, within Atu8188 at 574.502 kb on + strand, within Atu8188 at 574.562 kb on - strand, within Atu8188 at 574.591 kb on - strand, within Atu8188 at 574.650 kb on + strand, within Atu8188 at 574.806 kb on + strand, within Atu8188 at 574.838 kb on + strand, within Atu8188 at 574.969 kb on - strand at 575.041 kb on + strand at 575.191 kb on - strand, within Atu3525 at 575.213 kb on + strand, within Atu3525 at 575.218 kb on + strand, within Atu3525 at 575.236 kb on - strand, within Atu3525 at 575.312 kb on + strand, within Atu3525 at 575.320 kb on - strand, within Atu3525 at 575.381 kb on + strand, within Atu3525 at 575.432 kb on - strand, within Atu3525 at 575.432 kb on - strand, within Atu3525 at 575.660 kb on + strand, within Atu3525 at 575.793 kb on + strand at 576.001 kb on + strand at 576.226 kb on - strand at 576.429 kb on - strand, within Atu3527 at 576.694 kb on + strand, within Atu3527
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 574,189 - Atu8188 0.33 +0.7 574,314 - Atu8188 0.43 +0.7 574,315 - Atu8188 0.43 -0.1 574,315 - Atu8188 0.43 +0.9 574,414 + Atu8188 0.51 -0.2 574,414 + Atu8188 0.51 -1.1 574,414 - Atu8188 0.51 +0.1 574,422 - Atu8188 0.51 +0.7 574,454 - Atu8188 0.54 +1.3 574,479 + Atu8188 0.56 -0.4 574,502 + Atu8188 0.57 +1.7 574,562 - Atu8188 0.62 +4.1 574,591 - Atu8188 0.64 -0.6 574,650 + Atu8188 0.69 +0.8 574,806 + Atu8188 0.81 -0.0 574,838 + Atu8188 0.84 +0.8 574,969 - -0.5 575,041 + -0.1 575,191 - Atu3525 0.14 -0.1 575,213 + Atu3525 0.18 -0.3 575,218 + Atu3525 0.19 -0.0 575,236 - Atu3525 0.21 -0.2 575,312 + Atu3525 0.33 -1.7 575,320 - Atu3525 0.34 -0.9 575,381 + Atu3525 0.43 -1.7 575,432 - Atu3525 0.51 -0.3 575,432 - Atu3525 0.51 -0.1 575,660 + Atu3525 0.85 -0.3 575,793 + +0.7 576,001 + +3.3 576,226 - -0.5 576,429 - Atu3527 0.20 +0.1 576,694 + Atu3527 0.51 +0.7
Or see this region's nucleotide sequence