Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8186 and Atu3307 are separated by 92 nucleotides Atu3307 and Atu3308 overlap by 4 nucleotides
Atu8186: Atu8186 - cellulose synthesis protein, at 332,380 to 334,626
Atu8186
Atu3307: Atu3307 - endoglucanase, at 334,719 to 335,774
Atu3307
Atu3308: Atu3308 - celB protein, at 335,771 to 338,254
Atu3308
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 333.741 kb on + strand, within Atu8186 at 333.845 kb on + strand, within Atu8186 at 333.877 kb on + strand, within Atu8186 at 333.877 kb on + strand, within Atu8186 at 333.885 kb on - strand, within Atu8186 at 333.950 kb on + strand, within Atu8186 at 334.015 kb on + strand, within Atu8186 at 334.038 kb on + strand, within Atu8186 at 334.053 kb on - strand, within Atu8186 at 334.079 kb on + strand, within Atu8186 at 334.104 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.216 kb on - strand, within Atu8186 at 334.216 kb on - strand, within Atu8186 at 334.347 kb on + strand, within Atu8186 at 334.347 kb on + strand, within Atu8186 at 334.412 kb on + strand at 334.490 kb on - strand at 334.508 kb on - strand at 334.690 kb on + strand at 334.708 kb on - strand at 334.712 kb on + strand at 334.876 kb on + strand, within Atu3307 at 334.916 kb on - strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.122 kb on + strand, within Atu3307 at 335.140 kb on - strand, within Atu3307 at 335.353 kb on + strand, within Atu3307 at 335.416 kb on - strand, within Atu3307 at 335.470 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.673 kb on - strand at 335.673 kb on - strand at 335.805 kb on - strand at 335.863 kb on + strand at 335.931 kb on + strand at 335.939 kb on - strand at 335.939 kb on - strand at 335.955 kb on + strand at 336.052 kb on + strand, within Atu3308 at 336.153 kb on - strand, within Atu3308 at 336.155 kb on - strand, within Atu3308 at 336.160 kb on - strand, within Atu3308 at 336.176 kb on + strand, within Atu3308 at 336.469 kb on - strand, within Atu3308 at 336.488 kb on - strand, within Atu3308 at 336.590 kb on - strand, within Atu3308 at 336.651 kb on + strand, within Atu3308 at 336.661 kb on + strand, within Atu3308 at 336.669 kb on - strand, within Atu3308 at 336.669 kb on - strand, within Atu3308 at 336.717 kb on + strand, within Atu3308 at 336.733 kb on + strand, within Atu3308 at 336.759 kb on + strand, within Atu3308
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 333,741 + Atu8186 0.61 +0.4 333,845 + Atu8186 0.65 +0.5 333,877 + Atu8186 0.67 -0.1 333,877 + Atu8186 0.67 -1.0 333,885 - Atu8186 0.67 -0.1 333,950 + Atu8186 0.70 -0.7 334,015 + Atu8186 0.73 +1.5 334,038 + Atu8186 0.74 -2.3 334,053 - Atu8186 0.74 -2.2 334,079 + Atu8186 0.76 -0.5 334,104 + Atu8186 0.77 -0.6 334,208 + Atu8186 0.81 +1.6 334,208 + Atu8186 0.81 -0.2 334,208 + Atu8186 0.81 -0.3 334,216 - Atu8186 0.82 +0.3 334,216 - Atu8186 0.82 +0.1 334,347 + Atu8186 0.88 -0.2 334,347 + Atu8186 0.88 -0.3 334,412 + -0.0 334,490 - +0.1 334,508 - -0.2 334,690 + +0.3 334,708 - -0.6 334,712 + +0.0 334,876 + Atu3307 0.15 +0.6 334,916 - Atu3307 0.19 -0.2 335,078 + Atu3307 0.34 -0.4 335,078 + Atu3307 0.34 -0.1 335,122 + Atu3307 0.38 +0.3 335,140 - Atu3307 0.40 +0.7 335,353 + Atu3307 0.60 -0.0 335,416 - Atu3307 0.66 +0.2 335,470 - Atu3307 0.71 +0.3 335,583 - Atu3307 0.82 +3.0 335,583 - Atu3307 0.82 +3.9 335,588 - Atu3307 0.82 +0.2 335,588 - Atu3307 0.82 -0.2 335,588 - Atu3307 0.82 +1.7 335,673 - -0.6 335,673 - +0.4 335,805 - +1.1 335,863 + +1.4 335,931 + -1.4 335,939 - -0.6 335,939 - +0.7 335,955 + -1.8 336,052 + Atu3308 0.11 -0.6 336,153 - Atu3308 0.15 -1.1 336,155 - Atu3308 0.15 +0.8 336,160 - Atu3308 0.16 +0.2 336,176 + Atu3308 0.16 -0.7 336,469 - Atu3308 0.28 +0.1 336,488 - Atu3308 0.29 +0.3 336,590 - Atu3308 0.33 -0.4 336,651 + Atu3308 0.35 -0.5 336,661 + Atu3308 0.36 -0.7 336,669 - Atu3308 0.36 -0.1 336,669 - Atu3308 0.36 -0.6 336,717 + Atu3308 0.38 +0.3 336,733 + Atu3308 0.39 +0.6 336,759 + Atu3308 0.40 -1.9
Or see this region's nucleotide sequence