Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3261 and Atu3262 are separated by 100 nucleotides Atu3262 and Atu3263 are separated by 55 nucleotides
Atu3261: Atu3261 - ABC transporter permease, at 278,398 to 280,218
Atu3261
Atu3262: Atu3262 - ABC transporter permease, at 280,319 to 282,154
Atu3262
Atu3263: Atu3263 - L-seryl-tRNA(Ser) selenium transferase, at 282,210 to 283,406
Atu3263
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 279.376 kb on - strand, within Atu3261 at 279.384 kb on - strand, within Atu3261 at 279.438 kb on + strand, within Atu3261 at 279.453 kb on + strand, within Atu3261 at 279.590 kb on + strand, within Atu3261 at 279.598 kb on - strand, within Atu3261 at 279.679 kb on + strand, within Atu3261 at 279.695 kb on + strand, within Atu3261 at 279.833 kb on + strand, within Atu3261 at 279.854 kb on + strand, within Atu3261 at 279.857 kb on - strand, within Atu3261 at 279.866 kb on + strand, within Atu3261 at 280.030 kb on + strand, within Atu3261 at 280.038 kb on - strand at 280.058 kb on + strand at 280.082 kb on + strand at 280.090 kb on - strand at 280.100 kb on - strand at 280.117 kb on + strand at 280.222 kb on - strand at 280.282 kb on + strand at 280.334 kb on - strand at 280.340 kb on + strand at 280.374 kb on + strand at 280.382 kb on - strand at 280.510 kb on - strand, within Atu3262 at 280.585 kb on + strand, within Atu3262 at 280.618 kb on + strand, within Atu3262 at 280.618 kb on + strand, within Atu3262 at 280.743 kb on + strand, within Atu3262 at 280.803 kb on - strand, within Atu3262 at 280.820 kb on - strand, within Atu3262 at 280.954 kb on - strand, within Atu3262 at 280.956 kb on + strand, within Atu3262 at 281.015 kb on - strand, within Atu3262 at 281.017 kb on + strand, within Atu3262 at 281.017 kb on + strand, within Atu3262 at 281.017 kb on + strand, within Atu3262 at 281.064 kb on + strand, within Atu3262 at 281.153 kb on - strand, within Atu3262 at 281.168 kb on + strand, within Atu3262 at 281.370 kb on + strand, within Atu3262 at 281.370 kb on + strand, within Atu3262 at 281.370 kb on + strand, within Atu3262 at 281.377 kb on - strand, within Atu3262 at 281.378 kb on - strand, within Atu3262 at 281.415 kb on + strand, within Atu3262 at 281.423 kb on - strand, within Atu3262 at 281.492 kb on + strand, within Atu3262 at 281.497 kb on + strand, within Atu3262 at 281.497 kb on + strand, within Atu3262 at 281.515 kb on - strand, within Atu3262 at 281.733 kb on + strand, within Atu3262 at 281.753 kb on - strand, within Atu3262 at 281.753 kb on - strand, within Atu3262 at 281.776 kb on - strand, within Atu3262 at 281.856 kb on + strand, within Atu3262 at 281.864 kb on - strand, within Atu3262 at 281.864 kb on - strand, within Atu3262 at 282.157 kb on - strand at 282.211 kb on - strand at 282.230 kb on - strand at 282.325 kb on - strand at 282.361 kb on - strand, within Atu3263 at 282.426 kb on + strand, within Atu3263 at 282.429 kb on - strand, within Atu3263 at 282.429 kb on - strand, within Atu3263 at 282.443 kb on + strand, within Atu3263 at 282.464 kb on - strand, within Atu3263 at 282.515 kb on + strand, within Atu3263 at 282.528 kb on - strand, within Atu3263 at 282.572 kb on + strand, within Atu3263 at 282.701 kb on + strand, within Atu3263 at 282.709 kb on - strand, within Atu3263 at 282.712 kb on + strand, within Atu3263 at 282.778 kb on + strand, within Atu3263 at 282.786 kb on - strand, within Atu3263 at 282.859 kb on + strand, within Atu3263 at 282.867 kb on - strand, within Atu3263 at 282.921 kb on + strand, within Atu3263 at 282.926 kb on + strand, within Atu3263 at 282.994 kb on - strand, within Atu3263 at 282.994 kb on - strand, within Atu3263 at 283.001 kb on + strand, within Atu3263 at 283.010 kb on + strand, within Atu3263 at 283.091 kb on - strand, within Atu3263
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 279,376 - Atu3261 0.54 +0.0 279,384 - Atu3261 0.54 +0.7 279,438 + Atu3261 0.57 -1.0 279,453 + Atu3261 0.58 -0.4 279,590 + Atu3261 0.65 -0.1 279,598 - Atu3261 0.66 +0.1 279,679 + Atu3261 0.70 -0.4 279,695 + Atu3261 0.71 -0.3 279,833 + Atu3261 0.79 +0.5 279,854 + Atu3261 0.80 +0.9 279,857 - Atu3261 0.80 -0.9 279,866 + Atu3261 0.81 +1.8 280,030 + Atu3261 0.90 +0.4 280,038 - -0.8 280,058 + -0.1 280,082 + -0.0 280,090 - +0.4 280,100 - -0.5 280,117 + -0.1 280,222 - +1.7 280,282 + -0.5 280,334 - +0.7 280,340 + +0.1 280,374 + +0.4 280,382 - -0.7 280,510 - Atu3262 0.10 +0.1 280,585 + Atu3262 0.14 +1.2 280,618 + Atu3262 0.16 -0.9 280,618 + Atu3262 0.16 +0.9 280,743 + Atu3262 0.23 +1.7 280,803 - Atu3262 0.26 -0.1 280,820 - Atu3262 0.27 -0.9 280,954 - Atu3262 0.35 -1.2 280,956 + Atu3262 0.35 -0.2 281,015 - Atu3262 0.38 -0.1 281,017 + Atu3262 0.38 +0.3 281,017 + Atu3262 0.38 +2.6 281,017 + Atu3262 0.38 -0.5 281,064 + Atu3262 0.41 +0.2 281,153 - Atu3262 0.45 -1.0 281,168 + Atu3262 0.46 -0.1 281,370 + Atu3262 0.57 -0.1 281,370 + Atu3262 0.57 +0.7 281,370 + Atu3262 0.57 +0.7 281,377 - Atu3262 0.58 +0.5 281,378 - Atu3262 0.58 +0.6 281,415 + Atu3262 0.60 -1.9 281,423 - Atu3262 0.60 -0.7 281,492 + Atu3262 0.64 -0.4 281,497 + Atu3262 0.64 -0.0 281,497 + Atu3262 0.64 -0.2 281,515 - Atu3262 0.65 +0.5 281,733 + Atu3262 0.77 -0.2 281,753 - Atu3262 0.78 -0.9 281,753 - Atu3262 0.78 +0.2 281,776 - Atu3262 0.79 -0.2 281,856 + Atu3262 0.84 +0.4 281,864 - Atu3262 0.84 +0.2 281,864 - Atu3262 0.84 -0.2 282,157 - +1.0 282,211 - -0.8 282,230 - -0.6 282,325 - -0.9 282,361 - Atu3263 0.13 +0.9 282,426 + Atu3263 0.18 -0.6 282,429 - Atu3263 0.18 +3.7 282,429 - Atu3263 0.18 +0.4 282,443 + Atu3263 0.19 +0.0 282,464 - Atu3263 0.21 +0.7 282,515 + Atu3263 0.25 +0.1 282,528 - Atu3263 0.27 -0.7 282,572 + Atu3263 0.30 +0.7 282,701 + Atu3263 0.41 +0.9 282,709 - Atu3263 0.42 -0.5 282,712 + Atu3263 0.42 +0.3 282,778 + Atu3263 0.47 -1.1 282,786 - Atu3263 0.48 -0.2 282,859 + Atu3263 0.54 +0.4 282,867 - Atu3263 0.55 +0.5 282,921 + Atu3263 0.59 +0.9 282,926 + Atu3263 0.60 +0.2 282,994 - Atu3263 0.65 -0.9 282,994 - Atu3263 0.65 -0.4 283,001 + Atu3263 0.66 +0.6 283,010 + Atu3263 0.67 -0.5 283,091 - Atu3263 0.74 -1.0
Or see this region's nucleotide sequence