Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3228 and Atu3229 overlap by 4 nucleotides Atu3229 and Atu3230 are separated by 13 nucleotides Atu3230 and Atu8184 are separated by 157 nucleotides
Atu3228: Atu3228 - DNA polymerase III subunit alpha, at 242,333 to 245,608
Atu3228
Atu3229: Atu3229 - hypothetical protein, at 245,605 to 247,023
Atu3229
Atu3230: Atu3230 - hypothetical protein, at 247,037 to 247,801
Atu3230
Atu8184: Atu8184 - hypothetical protein, at 247,959 to 248,372
Atu8184
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.670 kb on + strand, within Atu3228 at 244.691 kb on - strand, within Atu3228 at 244.759 kb on - strand, within Atu3228 at 244.819 kb on + strand, within Atu3228 at 244.994 kb on + strand, within Atu3228 at 245.009 kb on + strand, within Atu3228 at 245.087 kb on + strand, within Atu3228 at 245.165 kb on - strand, within Atu3228 at 245.197 kb on + strand, within Atu3228 at 245.243 kb on + strand, within Atu3228 at 245.243 kb on + strand, within Atu3228 at 245.243 kb on + strand, within Atu3228 at 245.251 kb on - strand, within Atu3228 at 245.372 kb on - strand at 245.416 kb on - strand at 245.471 kb on - strand at 245.530 kb on + strand at 245.541 kb on - strand at 245.542 kb on + strand at 245.550 kb on - strand at 245.550 kb on - strand at 245.608 kb on + strand at 245.627 kb on + strand at 245.627 kb on + strand at 245.759 kb on + strand, within Atu3229 at 245.845 kb on - strand, within Atu3229 at 245.866 kb on - strand, within Atu3229 at 245.868 kb on + strand, within Atu3229 at 245.875 kb on - strand, within Atu3229 at 245.917 kb on + strand, within Atu3229 at 245.921 kb on + strand, within Atu3229 at 246.069 kb on + strand, within Atu3229 at 246.082 kb on - strand, within Atu3229 at 246.108 kb on + strand, within Atu3229 at 246.187 kb on + strand, within Atu3229 at 246.223 kb on - strand, within Atu3229 at 246.261 kb on - strand, within Atu3229 at 246.371 kb on + strand, within Atu3229 at 246.379 kb on - strand, within Atu3229 at 246.390 kb on + strand, within Atu3229 at 246.411 kb on - strand, within Atu3229 at 246.516 kb on + strand, within Atu3229 at 246.572 kb on - strand, within Atu3229 at 246.629 kb on + strand, within Atu3229 at 246.637 kb on - strand, within Atu3229 at 246.777 kb on + strand, within Atu3229 at 246.787 kb on + strand, within Atu3229 at 246.795 kb on - strand, within Atu3229 at 246.828 kb on + strand, within Atu3229 at 246.867 kb on + strand, within Atu3229 at 246.874 kb on + strand, within Atu3229 at 246.960 kb on + strand at 246.960 kb on + strand at 246.975 kb on - strand at 247.052 kb on + strand at 247.277 kb on - strand, within Atu3230 at 247.287 kb on - strand, within Atu3230 at 247.426 kb on - strand, within Atu3230 at 247.485 kb on + strand, within Atu3230 at 247.528 kb on - strand, within Atu3230 at 247.533 kb on - strand, within Atu3230 at 247.544 kb on + strand, within Atu3230 at 247.552 kb on - strand, within Atu3230 at 247.637 kb on - strand, within Atu3230 at 247.645 kb on + strand, within Atu3230 at 247.731 kb on - strand at 247.742 kb on - strand at 247.870 kb on + strand at 247.899 kb on - strand at 248.010 kb on - strand, within Atu8184
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 244,670 + Atu3228 0.71 +0.3 244,691 - Atu3228 0.72 -1.0 244,759 - Atu3228 0.74 -0.7 244,819 + Atu3228 0.76 -0.9 244,994 + Atu3228 0.81 +0.4 245,009 + Atu3228 0.82 +0.1 245,087 + Atu3228 0.84 +0.3 245,165 - Atu3228 0.86 -0.3 245,197 + Atu3228 0.87 -2.9 245,243 + Atu3228 0.89 +0.4 245,243 + Atu3228 0.89 +1.0 245,243 + Atu3228 0.89 -0.5 245,251 - Atu3228 0.89 +1.2 245,372 - +0.9 245,416 - -0.1 245,471 - -0.6 245,530 + +0.2 245,541 - -0.2 245,542 + -2.3 245,550 - -0.7 245,550 - +0.4 245,608 + -0.7 245,627 + +0.2 245,627 + -0.8 245,759 + Atu3229 0.11 +0.4 245,845 - Atu3229 0.17 -1.0 245,866 - Atu3229 0.18 -1.7 245,868 + Atu3229 0.19 +0.8 245,875 - Atu3229 0.19 -0.2 245,917 + Atu3229 0.22 +1.0 245,921 + Atu3229 0.22 -0.3 246,069 + Atu3229 0.33 +0.6 246,082 - Atu3229 0.34 -0.5 246,108 + Atu3229 0.35 +0.3 246,187 + Atu3229 0.41 -0.2 246,223 - Atu3229 0.44 -0.1 246,261 - Atu3229 0.46 +0.3 246,371 + Atu3229 0.54 +1.9 246,379 - Atu3229 0.55 -1.8 246,390 + Atu3229 0.55 -0.5 246,411 - Atu3229 0.57 -1.1 246,516 + Atu3229 0.64 -0.2 246,572 - Atu3229 0.68 +0.1 246,629 + Atu3229 0.72 -0.8 246,637 - Atu3229 0.73 -0.3 246,777 + Atu3229 0.83 -0.6 246,787 + Atu3229 0.83 +1.1 246,795 - Atu3229 0.84 +0.1 246,828 + Atu3229 0.86 -0.1 246,867 + Atu3229 0.89 +0.1 246,874 + Atu3229 0.89 -0.3 246,960 + -0.7 246,960 + -0.3 246,975 - +0.2 247,052 + +0.7 247,277 - Atu3230 0.31 +0.6 247,287 - Atu3230 0.33 -0.5 247,426 - Atu3230 0.51 -1.7 247,485 + Atu3230 0.59 -0.2 247,528 - Atu3230 0.64 +0.2 247,533 - Atu3230 0.65 -1.0 247,544 + Atu3230 0.66 +0.0 247,552 - Atu3230 0.67 +0.5 247,637 - Atu3230 0.78 -0.1 247,645 + Atu3230 0.79 +0.9 247,731 - +0.3 247,742 - +1.8 247,870 + -0.6 247,899 - -0.3 248,010 - Atu8184 0.12 +1.1
Or see this region's nucleotide sequence