Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3156 and Atu3157 are separated by 3 nucleotides Atu3157 and Atu3158 are separated by 140 nucleotides Atu3158 and Atu3159 are separated by 101 nucleotides
Atu3156: Atu3156 - ABC transporter permease, at 165,067 to 166,347
Atu3156
Atu3157: Atu3157 - ABC transporter permease, at 166,351 to 166,902
Atu3157
Atu3158: Atu3158 - ABC transporter substrate binding protein, at 167,043 to 168,038
Atu3158
Atu3159: Atu3159 - 3-hydroxyisobutyrate dehydrogenase, at 168,140 to 169,024
Atu3159
Position (kb) 167
168
169 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 166.066 kb on - strand, within Atu3156 at 166.066 kb on - strand, within Atu3156 at 166.077 kb on - strand, within Atu3156 at 166.249 kb on + strand at 166.293 kb on + strand at 166.357 kb on - strand at 166.357 kb on - strand at 166.412 kb on - strand, within Atu3157 at 166.427 kb on - strand, within Atu3157 at 166.459 kb on + strand, within Atu3157 at 166.534 kb on + strand, within Atu3157 at 166.566 kb on + strand, within Atu3157 at 166.567 kb on + strand, within Atu3157 at 166.572 kb on + strand, within Atu3157 at 166.577 kb on + strand, within Atu3157 at 166.727 kb on + strand, within Atu3157 at 166.760 kb on + strand, within Atu3157 at 166.768 kb on - strand, within Atu3157 at 166.768 kb on - strand, within Atu3157 at 166.768 kb on - strand, within Atu3157 at 166.871 kb on + strand at 166.902 kb on + strand at 166.910 kb on - strand at 166.978 kb on + strand at 167.021 kb on - strand at 167.153 kb on + strand, within Atu3158 at 167.161 kb on - strand, within Atu3158 at 167.263 kb on + strand, within Atu3158 at 167.276 kb on - strand, within Atu3158 at 167.278 kb on + strand, within Atu3158 at 167.367 kb on + strand, within Atu3158 at 167.384 kb on + strand, within Atu3158 at 167.410 kb on + strand, within Atu3158 at 167.432 kb on + strand, within Atu3158 at 167.480 kb on + strand, within Atu3158 at 167.537 kb on + strand, within Atu3158 at 167.545 kb on - strand, within Atu3158 at 167.680 kb on + strand, within Atu3158 at 168.041 kb on + strand at 168.095 kb on - strand at 168.104 kb on - strand at 168.215 kb on + strand at 168.229 kb on + strand, within Atu3159 at 168.482 kb on - strand, within Atu3159 at 168.569 kb on - strand, within Atu3159 at 168.586 kb on - strand, within Atu3159 at 168.610 kb on - strand, within Atu3159 at 168.619 kb on + strand, within Atu3159 at 168.624 kb on + strand, within Atu3159 at 168.640 kb on - strand, within Atu3159 at 168.645 kb on - strand, within Atu3159 at 168.689 kb on + strand, within Atu3159 at 168.798 kb on + strand, within Atu3159 at 168.820 kb on - strand, within Atu3159 at 168.838 kb on - strand, within Atu3159 at 168.853 kb on + strand, within Atu3159
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 166,066 - Atu3156 0.78 -0.8 166,066 - Atu3156 0.78 -0.7 166,077 - Atu3156 0.79 -1.3 166,249 + -0.4 166,293 + -0.2 166,357 - +0.2 166,357 - -1.6 166,412 - Atu3157 0.11 +0.6 166,427 - Atu3157 0.14 -0.5 166,459 + Atu3157 0.20 -0.8 166,534 + Atu3157 0.33 -0.5 166,566 + Atu3157 0.39 -0.5 166,567 + Atu3157 0.39 -0.3 166,572 + Atu3157 0.40 -0.8 166,577 + Atu3157 0.41 -0.1 166,727 + Atu3157 0.68 -0.3 166,760 + Atu3157 0.74 -0.6 166,768 - Atu3157 0.76 -1.0 166,768 - Atu3157 0.76 +0.2 166,768 - Atu3157 0.76 +0.4 166,871 + -0.2 166,902 + +0.9 166,910 - +0.0 166,978 + -0.7 167,021 - -0.1 167,153 + Atu3158 0.11 -0.6 167,161 - Atu3158 0.12 -1.0 167,263 + Atu3158 0.22 +0.2 167,276 - Atu3158 0.23 -0.0 167,278 + Atu3158 0.24 -0.6 167,367 + Atu3158 0.33 -0.2 167,384 + Atu3158 0.34 -0.7 167,410 + Atu3158 0.37 +0.6 167,432 + Atu3158 0.39 -0.9 167,480 + Atu3158 0.44 +0.1 167,537 + Atu3158 0.50 -0.0 167,545 - Atu3158 0.50 +0.6 167,680 + Atu3158 0.64 +1.3 168,041 + -1.2 168,095 - +0.7 168,104 - +0.3 168,215 + -1.0 168,229 + Atu3159 0.10 +4.1 168,482 - Atu3159 0.39 +1.1 168,569 - Atu3159 0.48 -0.2 168,586 - Atu3159 0.50 +0.2 168,610 - Atu3159 0.53 +0.3 168,619 + Atu3159 0.54 -0.2 168,624 + Atu3159 0.55 -0.0 168,640 - Atu3159 0.56 -0.1 168,645 - Atu3159 0.57 +1.6 168,689 + Atu3159 0.62 -0.5 168,798 + Atu3159 0.74 -0.1 168,820 - Atu3159 0.77 -0.3 168,838 - Atu3159 0.79 +1.0 168,853 + Atu3159 0.81 -0.6
Or see this region's nucleotide sequence