Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0096 and Atu0097 are separated by 265 nucleotides Atu0097 and Atu0098 overlap by 1 nucleotides Atu0098 and Atu0099 are separated by 15 nucleotides
Atu0096: Atu0096 - DNA polymerase III, tau subunit, at 99,494 to 101,368
Atu0096
Atu0097: Atu0097 - hypothetical protein, at 101,634 to 102,038
Atu0097
Atu0098: Atu0098 - mutT/nudix family protein, at 102,038 to 103,000
Atu0098
Atu0099: Atu0099 - prephenate dehydratase, at 103,016 to 103,879
Atu0099
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 101.627 kb on - strand at 101.641 kb on + strand at 101.735 kb on - strand, within Atu0097 at 101.782 kb on + strand, within Atu0097 at 101.790 kb on - strand, within Atu0097 at 101.874 kb on - strand, within Atu0097 at 101.942 kb on - strand, within Atu0097 at 101.989 kb on - strand, within Atu0097 at 101.989 kb on - strand, within Atu0097 at 102.156 kb on - strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.162 kb on + strand, within Atu0098 at 102.247 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.399 kb on - strand, within Atu0098 at 102.507 kb on + strand, within Atu0098 at 102.666 kb on + strand, within Atu0098 at 102.666 kb on + strand, within Atu0098 at 102.702 kb on + strand, within Atu0098 at 102.721 kb on - strand, within Atu0098 at 102.774 kb on - strand, within Atu0098 at 102.781 kb on + strand, within Atu0098 at 102.869 kb on - strand, within Atu0098 at 102.888 kb on + strand, within Atu0098 at 102.998 kb on - strand at 103.022 kb on - strand at 103.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 101,627 - +0.5 101,641 + +0.7 101,735 - Atu0097 0.25 +0.1 101,782 + Atu0097 0.37 -1.5 101,790 - Atu0097 0.39 +3.5 101,874 - Atu0097 0.59 +0.0 101,942 - Atu0097 0.76 -0.2 101,989 - Atu0097 0.88 +2.0 101,989 - Atu0097 0.88 -0.2 102,156 - Atu0098 0.12 +0.3 102,161 + Atu0098 0.13 +0.2 102,161 + Atu0098 0.13 -0.2 102,162 + Atu0098 0.13 -2.5 102,247 + Atu0098 0.22 +0.2 102,255 + Atu0098 0.23 +0.2 102,255 + Atu0098 0.23 +0.3 102,399 - Atu0098 0.37 -0.1 102,507 + Atu0098 0.49 -0.0 102,666 + Atu0098 0.65 -0.2 102,666 + Atu0098 0.65 -0.3 102,702 + Atu0098 0.69 +0.1 102,721 - Atu0098 0.71 -0.0 102,774 - Atu0098 0.76 -0.1 102,781 + Atu0098 0.77 +0.1 102,869 - Atu0098 0.86 -0.1 102,888 + Atu0098 0.88 -0.2 102,998 - -1.4 103,022 - +0.3 103,031 - +0.2
Or see this region's nucleotide sequence