Strain Fitness in Pseudomonas putida KT2440 around PP_5347

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
6,094,408	-		PP_5346	0.52	-1.1
6,094,438	+		PP_5346	0.54	+0.4
6,094,439	-		PP_5346	0.54	-1.7
6,094,456	+		PP_5346	0.55	-3.2
6,094,457	-		PP_5346	0.55	-2.4
6,094,463	-		PP_5346	0.55	-1.2
6,094,463	-		PP_5346	0.55	-1.7
6,094,463	-		PP_5346	0.55	-2.6
6,094,463	-		PP_5346	0.55	-1.6
6,094,463	-		PP_5346	0.55	-0.8
6,094,818	+		PP_5346	0.75	-2.0
6,094,834	+		PP_5346	0.76	-1.1
6,094,835	-		PP_5346	0.76	-2.4
6,094,991	-		PP_5346	0.85	-1.1
6,094,991	-		PP_5346	0.85	-1.5
6,094,991	-		PP_5346	0.85	-2.5
6,095,150	-				-2.6
6,095,195	+				-0.8
6,095,195	+				-1.4
6,095,271	+				-2.4
6,095,271	+				-1.5
6,095,272	+				-1.9
6,095,272	-				-0.3
6,095,272	-				-2.0
6,095,272	-				-1.0
6,095,272	-				-2.4
6,095,272	-				-2.0
6,095,272	-				-1.0
6,095,272	-				+0.6
6,095,273	+				-2.1
6,095,274	-				-1.5
6,095,274	-				-0.3
6,095,392	+				-2.3
6,095,439	+		PP_5347	0.11	-1.1
6,095,440	-		PP_5347	0.11	-1.6
6,095,575	+		PP_5347	0.21	-3.0
6,095,575	+		PP_5347	0.21	-2.0
6,095,575	+		PP_5347	0.21	-2.2
6,095,578	-		PP_5347	0.21	-1.3
6,095,586	+		PP_5347	0.21	-2.0
6,095,628	+		PP_5347	0.24	-2.9
6,095,629	-		PP_5347	0.25	-1.4
6,095,690	-		PP_5347	0.29	-1.6
6,095,690	-		PP_5347	0.29	-1.1
6,095,707	-		PP_5347	0.30	-0.1
6,095,809	+		PP_5347	0.37	-1.4
6,095,809	+		PP_5347	0.37	-1.4
6,095,809	+		PP_5347	0.37	-1.6
6,095,810	-		PP_5347	0.37	-2.4
6,095,810	-		PP_5347	0.37	+2.4
6,095,810	-		PP_5347	0.37	-2.2
6,095,810	-		PP_5347	0.37	-1.0
6,095,810	-		PP_5347	0.37	-3.1
6,095,810	-		PP_5347	0.37	-1.1
6,095,850	+		PP_5347	0.40	+0.1
6,095,850	+		PP_5347	0.40	+0.1
6,095,851	-		PP_5347	0.40	-1.0
6,095,898	+		PP_5347	0.44	-2.3
6,096,010	+		PP_5347	0.51	-0.7
6,096,011	-		PP_5347	0.51	-2.2
6,096,038	+		PP_5347	0.53	-2.1
6,096,038	+		PP_5347	0.53	-3.0
6,096,038	+		PP_5347	0.53	-2.0
6,096,039	-		PP_5347	0.53	-0.7
6,096,039	-		PP_5347	0.53	-1.5
6,096,184	+		PP_5347	0.64	-1.6
6,096,199	+		PP_5347	0.65	+0.4
6,096,199	+		PP_5347	0.65	-1.8
6,096,199	+		PP_5347	0.65	-1.7
6,096,199	+		PP_5347	0.65	-2.6
6,096,280	+		PP_5347	0.70	-1.3
6,096,280	+		PP_5347	0.70	-1.8
6,096,292	+		PP_5347	0.71	-1.8
6,096,292	+		PP_5347	0.71	-1.6
6,096,292	+		PP_5347	0.71	+1.4
6,096,292	+		PP_5347	0.71	-2.0
6,096,292	+		PP_5347	0.71	+0.6
6,096,293	-		PP_5347	0.71	-1.6
6,096,717	+				-1.1
6,096,718	-				-1.5
6,096,908	-				-0.6
6,097,003	+		PP_5348	0.12	-2.4
6,097,004	-		PP_5348	0.12	-1.4
6,097,009	-		PP_5348	0.13	-0.7
6,097,056	-		PP_5348	0.18	-0.1
6,097,056	-		PP_5348	0.18	-1.3
6,097,073	+		PP_5348	0.19	-2.0
6,097,074	-		PP_5348	0.19	-1.5
6,097,117	+		PP_5348	0.24	-1.7
6,097,118	-		PP_5348	0.24	-1.3
6,097,118	-		PP_5348	0.24	-0.7
6,097,214	+		PP_5348	0.34	-3.5
6,097,214	+		PP_5348	0.34	+0.9
6,097,471	+		PP_5348	0.61	-1.1
6,097,472	-		PP_5348	0.61	-0.2
6,097,472	-		PP_5348	0.61	-1.5
6,097,523	+		PP_5348	0.66	-1.6
6,097,524	-		PP_5348	0.66	-0.8
6,097,524	-		PP_5348	0.66	-1.3
6,097,567	-		PP_5348	0.71	-3.0
6,097,690	-		PP_5348	0.83	-0.6