Strain Fitness in Pseudomonas putida KT2440 around PP_5168

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
5,892,531	-		PP_5166	0.89	-0.2
5,892,591	+				+0.0
5,892,592	-				+1.3
5,892,679	+				-0.6
5,892,679	+				+0.8
5,892,735	-				-0.3
5,892,741	-				-1.1
5,892,840	-		PP_5167	0.26	+0.0
5,892,840	-		PP_5167	0.26	-0.5
5,893,006	+		PP_5167	0.55	-0.7
5,893,007	-		PP_5167	0.55	-3.3
5,893,248	-				+0.1
5,893,248	-				-0.8
5,893,284	+				+0.1
5,893,284	+				-1.2
5,893,308	+				+0.4
5,893,308	+				+0.4
5,893,308	+				-0.5
5,893,308	+				-1.3
5,893,308	+				+0.2
5,893,308	+				+1.0
5,893,308	+				-0.2
5,893,308	+				-0.5
5,893,308	+				-0.3
5,893,308	+				-0.3
5,893,308	+				+0.3
5,893,309	-				-1.2
5,893,309	-				+3.4
5,893,309	-				-0.1
5,893,309	-				+0.4
5,893,309	-				+1.4
5,893,309	-				-0.9
5,893,309	-				-0.1
5,893,309	-				-0.2
5,893,309	-				+0.8
5,893,309	-				-0.5
5,893,309	-				-0.8
5,893,309	-				+0.4
5,893,309	-				-0.1
5,893,309	-				+0.1
5,893,310	+				-0.1
5,893,310	+				+0.9
5,893,311	-				-1.1
5,893,311	-				+0.6
5,893,407	+				-0.2
5,893,407	+				-0.3
5,893,408	-				-1.0
5,893,408	-				+0.5
5,893,481	+				-0.2
5,893,481	+				-1.3
5,893,481	+				+1.4
5,893,481	+				-0.4
5,893,481	+				-0.5
5,893,481	+				-0.6
5,893,482	-				-1.5
5,893,482	-				+0.8
5,893,482	-				-0.5
5,893,482	-				-0.7
5,893,482	-				+0.5
5,893,482	-				-0.2
5,893,482	-				-1.3
5,893,485	+				-0.0
5,893,486	-				+1.4
5,893,770	-		PP_5168	0.29	-0.4
5,893,796	+		PP_5168	0.32	-0.8
5,893,797	-		PP_5168	0.32	-0.7
5,894,222	+		PP_5168	0.75	-2.0
5,894,409	+				-2.2
5,894,410	-				+0.1
5,894,452	-				+0.2
5,894,505	+				-0.2
5,894,508	+				-0.1
5,894,509	-				+0.8
5,894,509	-				-0.5
5,894,597	+		PP_5169	0.14	-1.9
5,894,597	+		PP_5169	0.14	+0.8
5,894,598	-		PP_5169	0.14	+2.4
5,894,598	-		PP_5169	0.14	-0.5
5,894,598	-		PP_5169	0.14	+0.0
5,894,598	-		PP_5169	0.14	+0.3
5,894,607	-				+0.4
5,894,703	+		PP_5169	0.26	-0.9
5,894,704	-		PP_5169	0.26	-0.5
5,894,720	+		PP_5169	0.28	+0.4
5,894,860	+		PP_5169	0.44	+2.4
5,894,908	+		PP_5169	0.50	+0.8
5,894,908	+		PP_5169	0.50	-1.5
5,894,908	+		PP_5169	0.50	-1.4
5,894,909	-		PP_5169	0.50	+0.5
5,894,909	-		PP_5169	0.50	+0.1
5,894,909	-		PP_5169	0.50	+0.4
5,894,909	-		PP_5169	0.50	+0.8
5,894,909	-		PP_5169	0.50	-0.4
5,894,917	-		PP_5169	0.51	+0.1
5,894,972	+		PP_5169	0.57	-0.7
5,894,972	+		PP_5169	0.57	+2.4
5,894,972	+		PP_5169	0.57	-0.2
5,895,053	+		PP_5169	0.66	-0.7
5,895,054	-		PP_5169	0.67	-0.5
5,895,054	-		PP_5169	0.67	+0.2
5,895,089	-		PP_5169	0.71	+0.3
5,895,089	-		PP_5169	0.71	+2.2
5,895,089	-		PP_5169	0.71	-0.4
5,895,089	-		PP_5169	0.71	+0.1
5,895,111	+		PP_5169	0.73	+0.0
5,895,112	-				+0.8
5,895,209	-		PP_5169	0.84	+2.4
5,895,273	+				-1.2
5,895,274	-				-0.8
5,895,455	-		PP_5170	0.12	-0.0
5,895,455	-		PP_5170	0.12	+0.9
5,895,455	-		PP_5170	0.12	+0.8
5,895,460	+		PP_5170	0.13	+0.5
5,895,460	+		PP_5170	0.13	+0.2
5,895,461	-		PP_5170	0.13	+0.0