Strain Fitness in Pseudomonas putida KT2440 around PP_5098

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
5,820,452	+		PP_5097	0.18	-1.6
5,820,615	-		PP_5097	0.32	-2.4
5,820,634	-		PP_5097	0.34	-2.3
5,820,643	-		PP_5097	0.34	-0.3
5,820,759	-		PP_5097	0.45	-1.4
5,820,946	+		PP_5097	0.61	-0.6
5,820,946	+		PP_5097	0.61	-3.0
5,820,946	+		PP_5097	0.61	-1.9
5,820,946	+		PP_5097	0.61	-2.8
5,820,946	+		PP_5097	0.61	-1.6
5,820,947	-		PP_5097	0.61	-1.7
5,820,947	-		PP_5097	0.61	-1.6
5,820,947	-		PP_5097	0.61	+0.9
5,820,947	-		PP_5097	0.61	-2.3
5,820,947	-		PP_5097	0.61	-1.1
5,820,947	-		PP_5097	0.61	-1.6
5,820,947	-		PP_5097	0.61	-1.3
5,820,947	-		PP_5097	0.61	-0.4
5,820,947	-		PP_5097	0.61	-1.6
5,820,947	-		PP_5097	0.61	-3.8
5,820,947	-		PP_5097	0.61	-3.1
5,820,947	-		PP_5097	0.61	-2.5
5,820,947	-		PP_5097	0.61	+0.9
5,820,950	+		PP_5097	0.61	-2.1
5,820,950	+		PP_5097	0.61	-1.3
5,820,951	-		PP_5097	0.61	-1.6
5,821,014	-		PP_5097	0.67	-2.4
5,821,049	+		PP_5097	0.70	-1.4
5,821,049	+		PP_5097	0.70	-1.6
5,821,049	+		PP_5097	0.70	-1.1
5,821,100	+		PP_5097	0.74	-0.3
5,821,100	+		PP_5097	0.74	+0.4
5,821,101	-		PP_5097	0.75	-1.4
5,821,127	+		PP_5097	0.77	-2.5
5,821,127	+		PP_5097	0.77	-3.7
5,821,193	+		PP_5097	0.83	-3.6
5,821,194	-		PP_5097	0.83	-1.7
5,821,290	-				-1.8
5,821,346	+				-2.0
5,821,347	-				+2.4
5,821,347	-				-2.1
5,821,347	-				-2.8
5,821,367	+				-1.6
5,821,367	+				-2.0
5,821,367	+				-3.6
5,821,367	+				-2.6
5,821,368	-				-0.1
5,821,368	-				-1.9
5,821,451	-		PP_5098	0.11	-1.4
5,821,545	-		PP_5098	0.26	-1.3
5,821,545	-		PP_5098	0.26	-1.4
5,821,669	-		PP_5098	0.45	+0.9
5,821,758	+		PP_5098	0.59	-1.1
5,821,803	+		PP_5098	0.66	-1.9
5,821,803	+		PP_5098	0.66	-0.9
5,821,803	+		PP_5098	0.66	-2.3
5,821,803	+		PP_5098	0.66	-0.4
5,821,803	+		PP_5098	0.66	-3.5
5,821,804	-		PP_5098	0.66	-2.3
5,821,804	-		PP_5098	0.66	+0.9
5,821,805	+		PP_5098	0.67	-2.1
5,821,805	+		PP_5098	0.67	-2.2
5,821,805	+		PP_5098	0.67	-2.3
5,821,806	-		PP_5098	0.67	-3.0
5,821,812	+		PP_5098	0.68	-2.5
5,821,813	-		PP_5098	0.68	-1.4
5,821,813	-		PP_5098	0.68	-0.4
5,821,813	-		PP_5098	0.68	-0.6
5,821,946	+		PP_5098	0.89	-1.6
5,821,947	-		PP_5098	0.89	-1.5
5,821,955	-				-0.4
5,821,955	-				-1.9
5,821,955	-				+0.1
5,821,971	+				+0.9
5,821,972	-				-0.6
5,822,130	-		PP_5099	0.20	+0.1
5,822,152	+		PP_5099	0.26	-0.7
5,822,356	+		PP_5099	0.72	-0.9
5,822,359	+		PP_5099	0.73	+0.2
5,822,359	+		PP_5099	0.73	-0.2
5,822,359	+		PP_5099	0.73	+0.3
5,822,360	-		PP_5099	0.73	-0.5
5,822,360	-		PP_5099	0.73	-0.7
5,822,360	-		PP_5099	0.73	-0.2
5,822,360	-		PP_5099	0.73	-0.0
5,822,360	-		PP_5099	0.73	+0.0
5,822,360	-		PP_5099	0.73	+0.0
5,822,494	+				+0.9
5,822,728	-		PP_5100	0.43	-0.1
5,822,728	-		PP_5100	0.43	+1.5
5,822,740	-		PP_5100	0.45	+0.2
5,822,989	+		PP_5100	0.87	-0.0
5,822,990	-		PP_5100	0.87	+0.9