Strain Fitness in Pseudomonas putida KT2440 around PP_5076

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
5,792,591	+		PP_5075	0.48	-2.6
5,792,591	+		PP_5075	0.48	-2.9
5,792,591	+		PP_5075	0.48	-1.4
5,792,591	+		PP_5075	0.48	-2.6
5,792,591	+		PP_5075	0.48	-3.3
5,792,592	-		PP_5075	0.48	-3.7
5,792,592	-		PP_5075	0.48	-1.5
5,792,592	-		PP_5075	0.48	+0.9
5,792,592	-		PP_5075	0.48	-3.9
5,792,592	-		PP_5075	0.48	+2.4
5,792,592	-		PP_5075	0.48	-0.9
5,792,592	-		PP_5075	0.48	+0.4
5,792,597	+		PP_5075	0.48	-0.1
5,792,597	+		PP_5075	0.48	-3.1
5,792,597	+		PP_5075	0.48	-4.3
5,792,597	+		PP_5075	0.48	-2.4
5,792,597	+		PP_5075	0.48	-2.4
5,792,598	-		PP_5075	0.48	-3.0
5,792,598	-		PP_5075	0.48	-2.4
5,792,598	-		PP_5075	0.48	-1.9
5,792,598	-		PP_5075	0.48	-1.7
5,792,598	-		PP_5075	0.48	-2.6
5,792,598	-		PP_5075	0.48	-3.1
5,792,598	-		PP_5075	0.48	-2.3
5,792,598	-		PP_5075	0.48	-2.1
5,792,598	-		PP_5075	0.48	-2.3
5,792,602	-		PP_5075	0.49	+1.4
5,792,602	-		PP_5075	0.49	-0.6
5,792,602	-		PP_5075	0.49	-0.7
5,792,627	+		PP_5075	0.50	+0.1
5,792,948	+		PP_5075	0.73	+0.4
5,792,948	+		PP_5075	0.73	-0.4
5,792,949	-		PP_5075	0.73	-2.1
5,792,949	-		PP_5075	0.73	-1.6
5,792,949	-		PP_5075	0.73	-1.6
5,792,949	-		PP_5075	0.73	-1.8
5,792,949	-		PP_5075	0.73	-0.4
5,792,949	-		PP_5075	0.73	-3.4
5,793,043	+		PP_5075	0.80	-0.9
5,793,043	+		PP_5075	0.80	-1.4
5,793,043	+		PP_5075	0.80	-2.1
5,793,043	+		PP_5075	0.80	-1.9
5,793,044	-		PP_5075	0.80	-1.7
5,793,044	-		PP_5075	0.80	-1.1
5,793,044	-		PP_5075	0.80	-3.4
5,793,162	-		PP_5075	0.88	-1.9
5,793,228	-				-1.4
5,793,346	+				-0.1
5,793,347	-				+0.4
5,793,347	-				-1.0
5,793,347	-				-2.2
5,793,362	+				-1.7
5,793,362	+				-0.4
5,793,363	-				+0.6
5,793,391	+				-2.4
5,793,391	+				-0.9
5,793,392	-				-0.6
5,793,536	+				-0.9
5,793,536	+				-1.6
5,793,536	+				-2.6
5,793,537	-				+2.4
5,793,593	+				-2.7
5,793,593	+				-1.8
5,793,594	-				-1.3
5,793,594	-				-1.1
5,793,594	-				-0.6
5,793,627	-				-0.7
5,793,627	-				-1.9
5,793,651	+				-3.3
5,793,652	-				-1.9
5,793,696	+				-1.4
5,793,696	+				+2.4
5,793,696	+				-2.5
5,793,696	+				-2.8
5,793,696	+				-2.1
5,793,696	+				+1.4
5,793,697	-				-0.6
5,793,697	-				-1.6
5,793,697	-				-1.3
5,793,697	-				+0.9
5,793,716	+				-1.8
5,793,716	+				-3.0
5,793,717	-				-0.9
5,793,717	-				-0.1
5,793,753	-				-0.6
5,793,794	+				-3.3
5,793,794	+				-0.1
5,793,795	-				-1.3
5,793,795	-				+1.4
5,793,795	-				-2.0
5,793,847	-				-3.4
5,793,847	-				-1.7
5,793,850	+				-2.8
5,793,851	-				-4.1
5,793,851	-				+2.4
5,793,908	+		PP_5076	0.10	-3.5
5,793,908	+		PP_5076	0.10	-3.3
5,793,908	+		PP_5076	0.10	-1.1
5,793,909	-		PP_5076	0.10	-1.1
5,794,010	+		PP_5076	0.13	-2.6
5,794,011	-		PP_5076	0.13	-2.8
5,794,242	+		PP_5076	0.18	-3.2
5,794,242	+		PP_5076	0.18	-1.4
5,794,242	+		PP_5076	0.18	-1.6
5,794,242	+		PP_5076	0.18	-2.8
5,794,361	+		PP_5076	0.20	-2.7
5,794,517	+		PP_5076	0.24	-0.7
5,794,517	+		PP_5076	0.24	-3.4
5,794,517	+		PP_5076	0.24	-2.0
5,794,517	+		PP_5076	0.24	-2.7
5,794,517	+		PP_5076	0.24	-1.4
5,794,517	+		PP_5076	0.24	-1.8
5,794,517	+		PP_5076	0.24	-1.6
5,794,517	+		PP_5076	0.24	-2.4
5,794,517	+		PP_5076	0.24	-1.4
5,794,517	+		PP_5076	0.24	-1.7
5,794,593	-		PP_5076	0.26	-1.6
5,794,593	-		PP_5076	0.26	-2.6
5,794,785	-		PP_5076	0.30	-0.4
5,794,853	+		PP_5076	0.31	-2.3
5,794,854	-		PP_5076	0.31	-2.5
5,794,900	+		PP_5076	0.33	-1.2
5,794,949	+		PP_5076	0.34	-3.1
5,794,949	+		PP_5076	0.34	-3.2
5,794,949	+		PP_5076	0.34	-2.4
5,794,950	-		PP_5076	0.34	-2.9
5,794,980	-		PP_5076	0.34	-2.9
5,795,142	-		PP_5076	0.38	-2.2
5,795,450	+		PP_5076	0.45	-1.6
5,795,451	-		PP_5076	0.45	-4.6
5,795,451	-		PP_5076	0.45	-0.0
5,795,519	+		PP_5076	0.46	-0.1
5,795,519	+		PP_5076	0.46	-3.5
5,795,520	-		PP_5076	0.46	-3.1
5,795,520	-		PP_5076	0.46	-1.9
5,795,520	-		PP_5076	0.46	-1.3
5,795,729	+		PP_5076	0.51	-3.3
5,795,748	+		PP_5076	0.52	-4.5
5,795,787	+		PP_5076	0.52	-1.8
5,795,788	-		PP_5076	0.52	-1.4
5,795,799	-		PP_5076	0.53	-1.4
5,795,801	+		PP_5076	0.53	-2.6
5,795,860	+		PP_5076	0.54	-3.5
5,795,861	-		PP_5076	0.54	-1.9
5,795,868	-		PP_5076	0.54	-1.9
5,795,868	-		PP_5076	0.54	-1.1
5,795,876	+		PP_5076	0.54	-1.6
5,796,052	-		PP_5076	0.58	-3.7
5,796,053	+		PP_5076	0.58	-0.1
5,796,053	+		PP_5076	0.58	-2.0
5,796,054	-		PP_5076	0.58	-1.0
5,796,155	+		PP_5076	0.61	+1.4
5,796,155	+		PP_5076	0.61	-2.6
5,796,155	+		PP_5076	0.61	-0.6
5,796,155	+		PP_5076	0.61	-3.5
5,796,155	+		PP_5076	0.61	-0.6
5,796,155	+		PP_5076	0.61	-3.9
5,796,155	+		PP_5076	0.61	-1.5
5,796,156	-		PP_5076	0.61	-1.7
5,796,322	+		PP_5076	0.65	-1.0
5,796,361	+		PP_5076	0.65	-3.0
5,796,487	+		PP_5076	0.68	-1.6
5,796,487	+		PP_5076	0.68	-1.9
5,796,488	-		PP_5076	0.68	-1.6
5,796,488	-		PP_5076	0.68	+0.3
5,796,530	+		PP_5076	0.69	+0.1
5,796,530	+		PP_5076	0.69	-2.4
5,796,530	+		PP_5076	0.69	-3.1
5,796,531	-		PP_5076	0.69	-2.4
5,796,554	+		PP_5076	0.70	-0.7
5,796,555	-		PP_5076	0.70	-3.3
5,796,555	-		PP_5076	0.70	-1.7
5,796,626	+		PP_5076	0.71	-3.3
5,796,626	+		PP_5076	0.71	-3.4
5,796,627	-		PP_5076	0.71	-2.5
5,796,761	-		PP_5076	0.74	-3.3
5,796,788	+		PP_5076	0.75	-3.1
5,796,788	+		PP_5076	0.75	-1.4
5,796,789	-		PP_5076	0.75	-0.6
5,796,823	+		PP_5076	0.76	-1.0
5,796,877	-		PP_5076	0.77	-0.9
5,796,917	+		PP_5076	0.78	-2.5
5,796,917	+		PP_5076	0.78	-3.1
5,796,917	+		PP_5076	0.78	-3.5
5,796,918	-		PP_5076	0.78	-2.1
5,796,918	-		PP_5076	0.78	-3.3
5,796,923	+		PP_5076	0.78	-3.0
5,796,924	-		PP_5076	0.78	-1.8
5,796,924	-		PP_5076	0.78	-3.3
5,796,924	-		PP_5076	0.78	-1.0
5,796,924	-		PP_5076	0.78	-3.0
5,796,924	-		PP_5076	0.78	-0.1
5,797,334	+		PP_5076	0.87	-1.0
5,797,334	+		PP_5076	0.87	-2.9
5,797,335	-		PP_5076	0.87	-4.3
5,797,367	+		PP_5076	0.88	-2.5
5,797,367	+		PP_5076	0.88	-2.6
5,797,367	+		PP_5076	0.88	-2.9
5,797,368	-		PP_5076	0.88	-3.4
5,797,368	-		PP_5076	0.88	-2.5
5,797,368	-		PP_5076	0.88	-2.6
5,797,368	-		PP_5076	0.88	-1.6
5,797,646	+				-2.6
5,797,646	+				-2.2
5,797,646	+				-3.1
5,797,646	+				-2.6
5,797,647	-				-0.9
5,797,833	+				-3.8
5,797,834	-				-2.0
5,797,834	-				-2.7
5,797,883	+				-2.8
5,797,884	-				-0.8
5,797,937	-				-1.0
5,797,937	-				-2.5
5,797,960	+				-1.6
5,797,960	+				-2.9
5,798,153	+				+0.3
5,798,153	+				+0.7
5,798,153	+				-1.2
5,798,153	+				-0.5
5,798,153	+				-1.0
5,798,153	+				-2.1
5,798,153	+				-0.6
5,798,153	+				-1.5
5,798,153	+				-0.1
5,798,154	-				+0.3
5,798,154	-				+0.1
5,798,154	-				-1.4
5,798,213	+				-1.6
5,798,224	+				-0.7
5,798,235	+				-0.4
5,798,235	+				-0.0
5,798,236	-				-0.1
5,798,239	+				+0.0
5,798,239	+				-0.1
5,798,240	-				+2.4
5,798,240	-				-1.0
5,798,271	+				+0.9
5,798,272	-				+1.9
5,798,315	-				-2.1
5,798,315	-				+0.9
5,798,315	-				-0.5
5,798,400	+				-0.5
5,798,412	+				+1.1
5,798,413	-				-0.8
5,798,413	-				+2.4
5,798,445	+		PP_5077	0.11	-0.2
5,798,445	+		PP_5077	0.11	-0.0
5,798,445	+		PP_5077	0.11	-0.7
5,798,446	-		PP_5077	0.11	+0.3
5,798,475	+		PP_5077	0.13	+0.9
5,798,476	-		PP_5077	0.13	+0.6
5,798,504	-		PP_5077	0.15	-1.1
5,798,523	+		PP_5077	0.16	-0.6
5,798,524	-		PP_5077	0.16	-0.3
5,798,524	-		PP_5077	0.16	+0.1
5,798,524	-		PP_5077	0.16	+0.4
5,798,524	-		PP_5077	0.16	+0.5
5,798,548	-		PP_5077	0.17	-0.5