Strain Fitness in Pseudomonas putida KT2440 around PP_4933

Experiment: 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.
5,612,995	-				-1.1
5,612,995	-				-1.7
5,613,096	+				-1.3
5,613,097	-				-0.6
5,613,097	-				+0.2
5,613,097	-				+0.1
5,613,097	-				-0.2
5,613,097	-				+0.9
5,613,206	-		PP_4933	0.16	-1.6
5,613,351	+		PP_4933	0.31	-0.1
5,613,351	+		PP_4933	0.31	+0.0
5,613,351	+		PP_4933	0.31	-0.4
5,613,352	-		PP_4933	0.31	-0.3
5,613,571	-		PP_4933	0.54	+0.9
5,613,571	-		PP_4933	0.54	+1.9
5,613,590	+		PP_4933	0.56	-0.7
5,613,616	-		PP_4933	0.58	-0.6
5,613,626	+		PP_4933	0.59	+0.6
5,613,626	+		PP_4933	0.59	+0.6
5,613,626	+		PP_4933	0.59	+1.3
5,613,627	-		PP_4933	0.60	-0.5
5,613,627	-		PP_4933	0.60	-0.6
5,613,627	-		PP_4933	0.60	+0.0
5,613,627	-		PP_4933	0.60	+2.0
5,613,743	+		PP_4933	0.72	+1.3
5,613,786	-		PP_4933	0.76	+1.3
5,613,786	-		PP_4933	0.76	+2.4
5,613,786	-		PP_4933	0.76	+0.5
5,613,820	+		PP_4933	0.79	-0.4
5,613,834	-		PP_4933	0.81	+0.6
5,613,888	+		PP_4933	0.86	+2.4